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Started by user Steffen Domke Checking out git https://github.com/larson-group/e3sm.git into /home/jenkins/workspace/branch_e3sm_test@script/4cc6f52cf1e9dad06d4feb0210516eb0ecc60bc43393533bf86f627dc2ffd28f to read jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/branch_e3sm_test@script/4cc6f52cf1e9dad06d4feb0210516eb0ecc60bc43393533bf86f627dc2ffd28f # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/wpwp_Ri_exp^{commit} # timeout=10 Checking out Revision d3e85ad550d9e4b49aef455347d5455e7505bdb2 (refs/remotes/origin/wpwp_Ri_exp) > git config core.sparsecheckout # timeout=10 > git checkout -f d3e85ad550d9e4b49aef455347d5455e7505bdb2 # timeout=10 Commit message: "Update clubb_intr.F90" First time build. Skipping changelog. [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_e3sm_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/branch_e3sm_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/wpwp_Ri_exp^{commit} # timeout=10 Checking out Revision d3e85ad550d9e4b49aef455347d5455e7505bdb2 (refs/remotes/origin/wpwp_Ri_exp) > git config core.sparsecheckout # timeout=10 > git checkout -f d3e85ad550d9e4b49aef455347d5455e7505bdb2 # timeout=10 Commit message: "Update clubb_intr.F90" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + rm -f /home/jenkins/test_logs/e3sm_run_gfortran_test/e3sm.bldlog.231017-112228 + git submodule init Submodule 'cime' (https://github.com/ESMCI/cime.git) registered for path 'cime' Submodule 'cosp2' (git@github.com:CFMIP/COSPv2.0.git) registered for path 'components/eam/src/physics/cosp2/external' Submodule 'rrtmgp' (git@github.com:RobertPincus/rte-rrtmgp.git) registered for path 'components/eam/src/physics/rrtmgp/external' Submodule 'fates' (git@github.com:NGEET/fates.git) registered for path 'components/elm/src/external_models/fates' Submodule 'alm-mpp' (git@github.com:MPP-LSM/MPP.git) registered for path 'components/elm/src/external_models/mpp' Submodule 'sbetr' (git@github.com:BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/elm/src/external_models/sbetr' Submodule 'components/mpas-source' (https://github.com/MPAS-Dev/MPAS-Model.git) registered for path 'components/mpas-source' Submodule 'externals/YAKL' (git@github.com:mrnorman/YAKL.git) registered for path 'externals/YAKL' Submodule 'externals/cub' (git@github.com:NVlabs/cub.git) registered for path 'externals/cub' Submodule 'externals/kokkos' (https://github.com/E3SM-Project/kokkos.git) registered for path 'externals/kokkos' Submodule 'externals/scorpio' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio' Submodule 'externals/scorpio_classic' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio_classic' + git submodule update Cloning into '/home/jenkins/workspace/branch_e3sm_test/cime'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cosp2/external'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmgp/external'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/components/mpas-source'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/YAKL'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/cub'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/kokkos'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/scorpio'... Cloning into '/home/jenkins/workspace/branch_e3sm_test/externals/scorpio_classic'... Submodule path 'cime': checked out '2b49cf54f1fb0a53832762dc29f19fc31c491d31' Submodule path 'components/eam/src/physics/cosp2/external': checked out '34d8eef3d231a87c0f73e565f6b5d548876b294a' Submodule path 'components/eam/src/physics/rrtmgp/external': checked out 'fdb714ea58e0fcbb23c81e0c6bf93840e5516c27' Submodule path 'components/elm/src/external_models/fates': checked out '5534a9405bbc5d9b825bf37bd0d65147bc0fda41' Submodule path 'components/elm/src/external_models/mpp': checked out 'c0c903e675e31e6b9ab447b0cc51ccd8a36fa7a7' Submodule path 'components/elm/src/external_models/sbetr': checked out 'f3636700b35441dbd30bf2921310a66f238d8e9e' Submodule path 'components/mpas-source': checked out 'bb1ea15299544e2b25144c06c621ff40fa482760' Submodule path 'externals/YAKL': checked out '7a5777e5d0afd3dae948462f2cb769043b06d073' Submodule path 'externals/cub': checked out 'c3cceac115c072fb63df1836ff46d8c60d9eb304' Submodule path 'externals/kokkos': checked out '8d62288677f9f7ed20d0e6a15009f0d9087e3170' Submodule path 'externals/scorpio': checked out '205e1e16d04aa2d449053af26204bc641d9feebf' Submodule path 'externals/scorpio_classic': checked out '154b0320ed99395ee7e790ed1122ca8bfac3bbc0' [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Modify Run Scripts) [Pipeline] sh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_BOMEX.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_RICO.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_ARM97.csh [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run BOMEX) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 2871892 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ echo '/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2023.2.1/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2022.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.9.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dal/2023.2.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.10.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=19 ++ '[' 19 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2023.2.0/env +++++ dirname /opt/intel/oneapi/advisor/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2023.2.0 ++++ echo /opt/intel/oneapi/advisor/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2023_DIR=/opt/intel/oneapi/advisor/2023.2.0 +++ ADVISOR_2023_DIR=/opt/intel/oneapi/advisor/2023.2.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2023.2.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2023.2.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2023.2.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2023.2.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.10.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.10.0/env ++++ cd /opt/intel/oneapi/ccl/2021.10.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.10.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig /opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2023.2.1/env ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/env +++ my_script_path=/opt/intel/oneapi/compiler/2023.2.1/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env +++ component_root=/opt/intel/oneapi/compiler/2023.2.1 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2023.2.1 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin /opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/fpgavars.sh +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++++ prepend_path libalteracl.so '' +++++ path_to_add=libalteracl.so +++++ path_is_now= +++++ '[' '' = '' ']' +++++ printf %s libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so +++++ prepend_path libintelocl_emu.so libalteracl.so +++++ path_to_add=libintelocl_emu.so +++++ path_is_now=libalteracl.so +++++ '[' '' = libalteracl.so ']' +++++ printf %s libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export OCL_ICD_FILENAMES ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin +++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ export PATH +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib +++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ export LD_LIBRARY_PATH +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include +++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ CPATH=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ export CPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64 '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=3 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2023.2.0/env ++++ printf %s /opt/intel/oneapi/dal/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/dal/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env +++ component_root=/opt/intel/oneapi/dal/2023.2.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2023.2.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ DALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ DAALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ export CPATH=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++ temp_var=4 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2023.2.0/env ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2023.2.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2023.2.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib '/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2023.2.0/documentation/man '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2023.2.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=5 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.10.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.10.0/bin /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.10.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.10.0/include /opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.10.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=6 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ echo /opt/intel/oneapi/dnnl/2023.2.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2023.2.0/env ++++ script=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2023.2.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0 +++++ cd /opt/intel/oneapi/dnnl/2023.2.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0 ++++ echo /opt/intel/oneapi/dnnl/2023.2.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2023.2.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=7 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/bin /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/include /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH +++ '[' -n '5.1.4(1)-release' ']' +++ BASH_AUTOCOMPLETE_SCRIPT=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh +++ [[ -f /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh ]] +++ source /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh ++++ complete -F _c2s_dpct c2s ++++ complete -F _c2s_dpct dpct ++ temp_var=8 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2022.2.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2022.2.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2022.2.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2022.2.0/linux/include /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2022.2.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=9 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2023.2.0/env +++++ dirname /opt/intel/oneapi/inspector/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2023.2.0 ++++ echo /opt/intel/oneapi/inspector/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2023_DIR=/opt/intel/oneapi/inspector/2023.2.0 +++ INSPECTOR_2023_DIR=/opt/intel/oneapi/inspector/2023.2.0 ++ temp_var=10 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.9.0/env ++++ echo /opt/intel/oneapi/ipp/2021.9.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.9.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/include /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 '/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++ temp_var=11 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.8.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.8.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.8.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.8.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.8.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/include /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig /opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.9.0/env ++++ echo /opt/intel/oneapi/ipp/2021.9.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.9.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/include /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/licenses:/home/jenkins/intel/licenses +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.10.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.10.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env +++ component_root=/opt/intel/oneapi/itac/2021.10.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.10.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.10.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.10.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.10.0/slib '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.10.0/bin /opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/bin ++++ path_is_now=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.10.0/man '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=14 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2023.2.0/env ++++ printf %s /opt/intel/oneapi/mkl/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2023.2.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2023.2.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2023.2.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2023.2.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=15 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.10.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.10.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.10.0/env ++++ cd /opt/intel/oneapi/mpi/2021.10.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.10.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.10.0//lib/mpi.jar:/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.10.0/man:/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.10.0/man:/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ grep -i Ubuntu ++++ cat /etc/lsb-release /etc/lsb-release.diverted /etc/os-release /etc/os-release.diverted +++ '[' -n 'DISTRIB_ID=Ubuntu DISTRIB_DESCRIPTION="Ubuntu 21.04" ID_LIKE="ubuntu debian" UBUNTU_CODENAME=hirsute ID_LIKE="ubuntu debian" UBUNTU_CODENAME=hirsute' ']' +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib/prov:/usr/lib/x86_64-linux-gnu/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=16 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.10.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.10.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../include /opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/.. /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/.. ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=17 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-55b86689/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2871892 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2023.2.0/env +++++ dirname /opt/intel/oneapi/vtune/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2023.2.0 ++++ echo /opt/intel/oneapi/vtune/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2023.2.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2023.2.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2023.2.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2023.2.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2023_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ VTUNE_PROFILER_2023_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2023.2.0 ++ temp_var=19 ++ '[' 19 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_BOMEX.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: d3e85ad550 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2023-10-17 11:34:52 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:34:53 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:34:53 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:34:53 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:34:53 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:34:53 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:34:53 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:34:53 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:34:53 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:34:53 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2023-10-17 11:34:56 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:34:56 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:34:56 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:34:57 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:34:57 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:34:57 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:34:57 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:34:57 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:34:57 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:34:57 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gptl.bldlog.231017-113456 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/mct.bldlog.231017-113456 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/pio.bldlog.231017-113456 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/csm_share.bldlog.231017-113456 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/kokkos.bldlog.231017-113456 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.231017-113456 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.231017-113456 Calling make, see top of log file for specific call Total build time: 399.510167 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-10-17 11:41:36 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:41:36 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:41:36 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:41:36 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:41:36 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:41:36 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:41:36 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:41:36 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:41:36 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:41:36 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2023-10-17 11:41:37 CASE.RUN BEGINS HERE 2023-10-17 11:41:37 RUN_MODEL BEGINS HERE 2023-10-17 11:41:37 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-10-17 11:41:37 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts 2023-10-17 11:41:37 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:41:37 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:41:37 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:41:37 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:41:37 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:41:37 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:41:37 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:41:37 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:41:37 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:41:37 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2023-10-17 11:41:38 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2023-10-17 11:41:38 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 2023-10-17 11:41:38 SAVE_PRERUN_PROVENANCE BEGINS HERE 2023-10-17 11:41:38 SAVE_PRERUN_PROVENANCE HAS FINISHED 2023-10-17 11:41:38 MODEL EXECUTION BEGINS HERE 2023-10-17 11:41:39 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.231017-114137 Submitted job case.run with id None BOMEX was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run DYCOMSrf01) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 2986339 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ echo '/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2023.2.1/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2022.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.9.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dal/2023.2.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.10.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=19 ++ '[' 19 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2023.2.0/env +++++ dirname /opt/intel/oneapi/advisor/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2023.2.0 ++++ echo /opt/intel/oneapi/advisor/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2023_DIR=/opt/intel/oneapi/advisor/2023.2.0 +++ ADVISOR_2023_DIR=/opt/intel/oneapi/advisor/2023.2.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2023.2.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2023.2.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2023.2.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2023.2.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.10.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.10.0/env ++++ cd /opt/intel/oneapi/ccl/2021.10.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.10.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig /opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2023.2.1/env ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/env +++ my_script_path=/opt/intel/oneapi/compiler/2023.2.1/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env +++ component_root=/opt/intel/oneapi/compiler/2023.2.1 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2023.2.1 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin /opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/fpgavars.sh +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++++ prepend_path libalteracl.so '' +++++ path_to_add=libalteracl.so +++++ path_is_now= +++++ '[' '' = '' ']' +++++ printf %s libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so +++++ prepend_path libintelocl_emu.so libalteracl.so +++++ path_to_add=libintelocl_emu.so +++++ path_is_now=libalteracl.so +++++ '[' '' = libalteracl.so ']' +++++ printf %s libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export OCL_ICD_FILENAMES ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin +++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ export PATH +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib +++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ export LD_LIBRARY_PATH +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include +++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ CPATH=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ export CPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64 '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=3 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2023.2.0/env ++++ printf %s /opt/intel/oneapi/dal/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/dal/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env +++ component_root=/opt/intel/oneapi/dal/2023.2.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2023.2.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ DALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ DAALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ export CPATH=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++ temp_var=4 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2023.2.0/env ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2023.2.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2023.2.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib '/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2023.2.0/documentation/man '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2023.2.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=5 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.10.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.10.0/bin /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.10.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.10.0/include /opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.10.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=6 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ echo /opt/intel/oneapi/dnnl/2023.2.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2023.2.0/env ++++ script=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2023.2.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0 +++++ cd /opt/intel/oneapi/dnnl/2023.2.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0 ++++ echo /opt/intel/oneapi/dnnl/2023.2.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2023.2.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=7 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/bin /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/include /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH +++ '[' -n '5.1.4(1)-release' ']' +++ BASH_AUTOCOMPLETE_SCRIPT=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh +++ [[ -f /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh ]] +++ source /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh ++++ complete -F _c2s_dpct c2s ++++ complete -F _c2s_dpct dpct ++ temp_var=8 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2022.2.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2022.2.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2022.2.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2022.2.0/linux/include /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2022.2.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=9 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2023.2.0/env +++++ dirname /opt/intel/oneapi/inspector/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2023.2.0 ++++ echo /opt/intel/oneapi/inspector/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2023_DIR=/opt/intel/oneapi/inspector/2023.2.0 +++ INSPECTOR_2023_DIR=/opt/intel/oneapi/inspector/2023.2.0 ++ temp_var=10 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.9.0/env ++++ echo /opt/intel/oneapi/ipp/2021.9.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.9.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/include /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 '/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++ temp_var=11 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.8.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.8.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.8.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.8.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.8.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/include /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig /opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.9.0/env ++++ echo /opt/intel/oneapi/ipp/2021.9.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.9.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/include /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/licenses:/home/jenkins/intel/licenses +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.10.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.10.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env +++ component_root=/opt/intel/oneapi/itac/2021.10.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.10.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.10.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.10.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.10.0/slib '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.10.0/bin /opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/bin ++++ path_is_now=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.10.0/man '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=14 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2023.2.0/env ++++ printf %s /opt/intel/oneapi/mkl/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2023.2.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2023.2.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2023.2.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2023.2.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=15 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.10.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.10.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.10.0/env ++++ cd /opt/intel/oneapi/mpi/2021.10.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.10.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.10.0//lib/mpi.jar:/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.10.0/man:/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.10.0/man:/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ grep -i Ubuntu ++++ cat /etc/lsb-release /etc/lsb-release.diverted /etc/os-release /etc/os-release.diverted +++ '[' -n 'DISTRIB_ID=Ubuntu DISTRIB_DESCRIPTION="Ubuntu 21.04" ID_LIKE="ubuntu debian" UBUNTU_CODENAME=hirsute ID_LIKE="ubuntu debian" UBUNTU_CODENAME=hirsute' ']' +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib/prov:/usr/lib/x86_64-linux-gnu/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=16 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.10.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.10.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../include /opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/.. /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/.. ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=17 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-87551722/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 2986339 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2023.2.0/env +++++ dirname /opt/intel/oneapi/vtune/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2023.2.0 ++++ echo /opt/intel/oneapi/vtune/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2023.2.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2023.2.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2023.2.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2023.2.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2023_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ VTUNE_PROFILER_2023_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2023.2.0 ++ temp_var=19 ++ '[' 19 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: d3e85ad550 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2023-10-17 11:41:53 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:41:53 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:41:53 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:41:53 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:41:54 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:41:54 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:41:54 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:41:54 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:41:54 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:41:54 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2023-10-17 11:41:56 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:41:57 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:41:57 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:41:57 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:41:57 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:41:57 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:41:57 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:41:57 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:41:57 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:41:57 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gptl.bldlog.231017-114156 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/mct.bldlog.231017-114156 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/pio.bldlog.231017-114156 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/csm_share.bldlog.231017-114156 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/kokkos.bldlog.231017-114156 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.231017-114156 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.231017-114156 Calling make, see top of log file for specific call Total build time: 468.153214 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-10-17 11:49:45 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:49:45 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:49:45 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:49:45 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:49:45 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:49:45 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:49:45 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:49:45 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:49:45 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:49:45 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2023-10-17 11:49:46 CASE.RUN BEGINS HERE 2023-10-17 11:49:46 RUN_MODEL BEGINS HERE 2023-10-17 11:49:46 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-10-17 11:49:46 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts 2023-10-17 11:49:46 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:49:46 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:49:46 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:49:46 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:49:46 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:49:46 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:49:46 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:49:46 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:49:46 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:49:46 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2023-10-17 11:49:47 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2023-10-17 11:49:47 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 2023-10-17 11:49:47 SAVE_PRERUN_PROVENANCE BEGINS HERE 2023-10-17 11:49:47 SAVE_PRERUN_PROVENANCE HAS FINISHED 2023-10-17 11:49:47 MODEL EXECUTION BEGINS HERE 2023-10-17 11:49:48 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run/e3sm.log.231017-114946 Submitted job case.run with id None DYCOMSrf01 was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run RICO) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ printf '%s\n' --force +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 3103387 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ echo '/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2023.2.1/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2022.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.9.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dal/2023.2.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.10.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=19 ++ '[' 19 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2023.2.0/env +++++ dirname /opt/intel/oneapi/advisor/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2023.2.0 ++++ echo /opt/intel/oneapi/advisor/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2023_DIR=/opt/intel/oneapi/advisor/2023.2.0 +++ ADVISOR_2023_DIR=/opt/intel/oneapi/advisor/2023.2.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2023.2.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2023.2.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2023.2.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2023.2.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.10.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.10.0/env ++++ cd /opt/intel/oneapi/ccl/2021.10.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.10.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig /opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2023.2.1/env ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/env +++ my_script_path=/opt/intel/oneapi/compiler/2023.2.1/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env +++ component_root=/opt/intel/oneapi/compiler/2023.2.1 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2023.2.1 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin /opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/fpgavars.sh +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++++ prepend_path libalteracl.so '' +++++ path_to_add=libalteracl.so +++++ path_is_now= +++++ '[' '' = '' ']' +++++ printf %s libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so +++++ prepend_path libintelocl_emu.so libalteracl.so +++++ path_to_add=libintelocl_emu.so +++++ path_is_now=libalteracl.so +++++ '[' '' = libalteracl.so ']' +++++ printf %s libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export OCL_ICD_FILENAMES ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin +++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ export PATH +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib +++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ export LD_LIBRARY_PATH +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include +++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ CPATH=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ export CPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64 '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=3 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2023.2.0/env ++++ printf %s /opt/intel/oneapi/dal/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/dal/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env +++ component_root=/opt/intel/oneapi/dal/2023.2.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2023.2.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ DALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ DAALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ export CPATH=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++ temp_var=4 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2023.2.0/env ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2023.2.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2023.2.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib '/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2023.2.0/documentation/man '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2023.2.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=5 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.10.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.10.0/bin /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.10.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.10.0/include /opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.10.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=6 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ echo /opt/intel/oneapi/dnnl/2023.2.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2023.2.0/env ++++ script=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2023.2.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0 +++++ cd /opt/intel/oneapi/dnnl/2023.2.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0 ++++ echo /opt/intel/oneapi/dnnl/2023.2.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2023.2.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=7 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/bin /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/include /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH +++ '[' -n '5.1.4(1)-release' ']' +++ BASH_AUTOCOMPLETE_SCRIPT=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh +++ [[ -f /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh ]] +++ source /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh ++++ complete -F _c2s_dpct c2s ++++ complete -F _c2s_dpct dpct ++ temp_var=8 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2022.2.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2022.2.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2022.2.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2022.2.0/linux/include /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2022.2.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=9 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2023.2.0/env +++++ dirname /opt/intel/oneapi/inspector/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2023.2.0 ++++ echo /opt/intel/oneapi/inspector/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2023_DIR=/opt/intel/oneapi/inspector/2023.2.0 +++ INSPECTOR_2023_DIR=/opt/intel/oneapi/inspector/2023.2.0 ++ temp_var=10 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.9.0/env ++++ echo /opt/intel/oneapi/ipp/2021.9.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.9.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/include /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 '/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++ temp_var=11 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.8.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.8.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.8.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.8.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.8.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/include /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig /opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.9.0/env ++++ echo /opt/intel/oneapi/ipp/2021.9.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.9.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/include /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/licenses:/home/jenkins/intel/licenses +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.10.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.10.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env +++ component_root=/opt/intel/oneapi/itac/2021.10.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.10.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.10.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.10.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.10.0/slib '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.10.0/bin /opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/bin ++++ path_is_now=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.10.0/man '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=14 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2023.2.0/env ++++ printf %s /opt/intel/oneapi/mkl/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2023.2.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2023.2.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2023.2.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2023.2.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=15 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.10.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.10.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.10.0/env ++++ cd /opt/intel/oneapi/mpi/2021.10.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.10.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.10.0//lib/mpi.jar:/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.10.0/man:/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.10.0/man:/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ grep -i Ubuntu ++++ cat /etc/lsb-release /etc/lsb-release.diverted /etc/os-release /etc/os-release.diverted +++ '[' -n 'DISTRIB_ID=Ubuntu DISTRIB_DESCRIPTION="Ubuntu 21.04" ID_LIKE="ubuntu debian" UBUNTU_CODENAME=hirsute ID_LIKE="ubuntu debian" UBUNTU_CODENAME=hirsute' ']' +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib/prov:/usr/lib/x86_64-linux-gnu/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=16 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.10.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.10.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../include /opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/.. /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/.. ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=17 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4fdd3baa/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3103387 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2023.2.0/env +++++ dirname /opt/intel/oneapi/vtune/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2023.2.0 ++++ echo /opt/intel/oneapi/vtune/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2023.2.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2023.2.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2023.2.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2023.2.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2023_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ VTUNE_PROFILER_2023_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2023.2.0 ++ temp_var=19 ++ '[' 19 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_RICO.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: d3e85ad550 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2023-10-17 11:50:07 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:50:08 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:50:08 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:50:08 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:50:08 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:50:08 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:50:08 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:50:08 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:50:08 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:50:08 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2023-10-17 11:50:11 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:50:11 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:50:11 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:50:11 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:50:11 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:50:11 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:50:11 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:50:11 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:50:12 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:50:12 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gptl.bldlog.231017-115011 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/mct.bldlog.231017-115011 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/pio.bldlog.231017-115011 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/csm_share.bldlog.231017-115011 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/kokkos.bldlog.231017-115011 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.231017-115011 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.231017-115011 Calling make, see top of log file for specific call Total build time: 529.831002 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-10-17 11:59:01 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:59:01 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:59:01 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:59:01 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:59:01 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:59:01 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:59:01 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:59:01 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:59:02 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:59:02 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2023-10-17 11:59:02 CASE.RUN BEGINS HERE 2023-10-17 11:59:02 RUN_MODEL BEGINS HERE 2023-10-17 11:59:02 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-10-17 11:59:02 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts 2023-10-17 11:59:02 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:59:02 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:59:02 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:59:02 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:59:02 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:59:02 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:59:02 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:59:02 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:59:02 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:59:02 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2023-10-17 11:59:03 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2023-10-17 11:59:03 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 2023-10-17 11:59:03 SAVE_PRERUN_PROVENANCE BEGINS HERE 2023-10-17 11:59:03 SAVE_PRERUN_PROVENANCE HAS FINISHED 2023-10-17 11:59:03 MODEL EXECUTION BEGINS HERE 2023-10-17 11:59:04 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/run/e3sm.log.231017-115902 Submitted job case.run with id None RICO was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run ARM97) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 3218390 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ echo '/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2023.2.1/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2022.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.9.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.10.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2023.2.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2023.2.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.10.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2023.2.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.10.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dal/2023.2.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2023.2.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2023.2.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.10.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.10.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.10.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2023.2.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl compiler compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=19 ++ '[' 19 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' +++ awk NF ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2023.2.0/env +++++ dirname /opt/intel/oneapi/advisor/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2023.2.0 ++++ echo /opt/intel/oneapi/advisor/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2023_DIR=/opt/intel/oneapi/advisor/2023.2.0 +++ ADVISOR_2023_DIR=/opt/intel/oneapi/advisor/2023.2.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2023.2.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2023.2.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2023.2.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2023.2.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.10.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.10.0/env ++++ cd /opt/intel/oneapi/ccl/2021.10.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.10.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig /opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2023.2.1/env ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/env +++ my_script_path=/opt/intel/oneapi/compiler/2023.2.1/env ++++ dirname -- /opt/intel/oneapi/compiler/2023.2.1/env +++ component_root=/opt/intel/oneapi/compiler/2023.2.1 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2023.2.1 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin /opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/fpgavars.sh +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++++ prepend_path libalteracl.so '' +++++ path_to_add=libalteracl.so +++++ path_is_now= +++++ '[' '' = '' ']' +++++ printf %s libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so +++++ prepend_path libintelocl_emu.so libalteracl.so +++++ path_to_add=libintelocl_emu.so +++++ path_is_now=libalteracl.so +++++ '[' '' = libalteracl.so ']' +++++ printf %s libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export OCL_ICD_FILENAMES ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin +++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ export PATH +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib +++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ export LD_LIBRARY_PATH +++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include +++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ CPATH=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ export CPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64 '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP ++++ path_is_now=/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=3 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2023.2.0/env ++++ printf %s /opt/intel/oneapi/dal/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/dal/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dal/2023.2.0/env +++ component_root=/opt/intel/oneapi/dal/2023.2.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2023.2.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ DALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ DAALROOT=/opt/intel/oneapi/dal/2023.2.0 +++ export CPATH=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++ temp_var=4 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2023.2.0/env ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2023.2.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2023.2.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2023.2.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib '/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2023.2.0/documentation/man '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2023.2.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=5 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.10.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.10.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.10.0/bin /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.10.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.10.0/include /opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.10.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=6 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ echo /opt/intel/oneapi/dnnl/2023.2.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ tr ' ' '\n' +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2023.2.0/env ++++ script=/opt/intel/oneapi/dnnl/2023.2.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2023.2.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0 +++++ cd /opt/intel/oneapi/dnnl/2023.2.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2023.2.0 ++++ echo /opt/intel/oneapi/dnnl/2023.2.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2023.2.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=7 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2023.2.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2023.2.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/bin /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2023.2.0/include /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH +++ '[' -n '5.1.4(1)-release' ']' +++ BASH_AUTOCOMPLETE_SCRIPT=/opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh +++ [[ -f /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh ]] +++ source /opt/intel/oneapi/dpcpp-ct/2023.2.0/env/bash-autocomplete.sh ++++ complete -F _c2s_dpct c2s ++++ complete -F _c2s_dpct dpct ++ temp_var=8 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2022.2.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2022.2.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2022.2.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2022.2.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2022.2.0/linux/include /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2022.2.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=9 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2023.2.0/env +++++ dirname /opt/intel/oneapi/inspector/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2023.2.0 ++++ echo /opt/intel/oneapi/inspector/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2023_DIR=/opt/intel/oneapi/inspector/2023.2.0 +++ INSPECTOR_2023_DIR=/opt/intel/oneapi/inspector/2023.2.0 ++ temp_var=10 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.9.0/env ++++ echo /opt/intel/oneapi/ipp/2021.9.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.9.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/include /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 '/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp ++++ path_is_now=/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++ temp_var=11 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.8.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.8.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.8.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.8.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.8.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.8.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/include /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig /opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.9.0/env ++++ echo /opt/intel/oneapi/ipp/2021.9.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.9.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.9.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.9.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/include /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/licenses:/home/jenkins/intel/licenses +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.10.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.10.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.10.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.10.0/env +++ component_root=/opt/intel/oneapi/itac/2021.10.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.10.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.10.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.10.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.10.0/slib '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.10.0/bin /opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/bin ++++ path_is_now=/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.10.0/man '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.10.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=14 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2023.2.0/env ++++ printf %s /opt/intel/oneapi/mkl/2023.2.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2023.2.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2023.2.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2023.2.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2023.2.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2023.2.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2023.2.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2023.2.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=15 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.10.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.10.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.10.0/env ++++ cd /opt/intel/oneapi/mpi/2021.10.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.10.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.10.0//lib/mpi.jar:/opt/intel/oneapi/dal/2023.2.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.10.0/man:/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.10.0/man:/opt/intel/oneapi/itac/2021.10.0/man:/opt/intel/oneapi/debugger/2023.2.0/documentation/man:/opt/intel/oneapi/compiler/2023.2.1/documentation/en/man/common:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ cat /etc/lsb-release /etc/lsb-release.diverted /etc/os-release /etc/os-release.diverted ++++ grep -i Ubuntu +++ '[' -n 'DISTRIB_ID=Ubuntu DISTRIB_DESCRIPTION="Ubuntu 21.04" ID_LIKE="ubuntu debian" UBUNTU_CODENAME=hirsute ID_LIKE="ubuntu debian" UBUNTU_CODENAME=hirsute' ']' +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib/prov:/usr/lib/x86_64-linux-gnu/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=16 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.10.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.10.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../include /opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/.. /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/.. ++++ path_is_now=/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=17 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-4b43263a/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 3218390 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.10.0/env/../include:/opt/intel/oneapi/mpi/2021.10.0//include:/opt/intel/oneapi/mkl/2023.2.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/ippcp/2021.8.0/include:/opt/intel/oneapi/ipp/2021.9.0/include:/opt/intel/oneapi/dpl/2022.2.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2023.2.0/include:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.10.0/include:/opt/intel/oneapi/dal/2023.2.0/include:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/include:/opt/intel/oneapi/ccl/2021.10.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.10.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.10.0//lib/release:/opt/intel/oneapi/mpi/2021.10.0//lib:/opt/intel/oneapi/mkl/2023.2.0/lib/intel64:/opt/intel/oneapi/itac/2021.10.0/slib:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.8.0/lib/intel64:/opt/intel/oneapi/ipp/2021.9.0/lib/intel64:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2023.2.0/dep/lib:/opt/intel/oneapi/dal/2023.2.0/lib/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/x64:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.10.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.10.0/env/..:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/ipp/2021.9.0/lib/cmake/ipp:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2023.2.0:/opt/intel/oneapi/compiler/2023.2.1/linux/IntelDPCPP:/opt/intel/oneapi/ccl/2021.10.0/lib/cmake/oneCCL +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2023.2.0/env +++++ dirname /opt/intel/oneapi/vtune/2023.2.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2023.2.0 ++++ echo /opt/intel/oneapi/vtune/2023.2.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2023.2.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.10.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.8.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2023.2.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2022.2.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2023.2.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2023.2.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2023.2.1/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.10.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2023.2.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2023.2.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2023.2.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.10.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.10.0//bin:/opt/intel/oneapi/mkl/2023.2.0/bin/intel64:/opt/intel/oneapi/itac/2021.10.0/bin:/opt/intel/oneapi/inspector/2023.2.0/bin64:/opt/intel/oneapi/dpcpp-ct/2023.2.0/bin:/opt/intel/oneapi/dev-utilities/2021.10.0/bin:/opt/intel/oneapi/debugger/2023.2.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64:/opt/intel/oneapi/compiler/2023.2.1/linux/bin:/opt/intel/oneapi/advisor/2023.2.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/NETCDF-Fortran-4.5.3-gfortran/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2023.2.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2023.2.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2023.2.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2023.2.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2023.2.1/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2023.2.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2023_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ VTUNE_PROFILER_2023_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2023.2.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2023.2.0 ++ temp_var=19 ++ '[' 19 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_ARM97.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: d3e85ad550 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2023-10-17 11:59:18 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:59:18 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:59:19 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:59:19 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:59:19 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:59:19 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:59:19 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:59:19 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:59:19 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:59:19 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2023-10-17 11:59:21 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 11:59:21 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 11:59:22 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 11:59:22 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 11:59:22 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 11:59:22 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 11:59:22 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 11:59:22 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 11:59:22 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 11:59:22 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/gptl.bldlog.231017-115921 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/mct.bldlog.231017-115921 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/pio.bldlog.231017-115921 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/csm_share.bldlog.231017-115921 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/kokkos.bldlog.231017-115921 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.bldlog.231017-115921 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.bldlog.231017-115921 Calling make, see top of log file for specific call Total build time: 504.137254 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-10-17 12:07:46 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 12:07:46 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 12:07:46 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 12:07:46 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 12:07:46 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 12:07:46 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 12:07:46 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 12:07:46 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 12:07:46 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 12:07:46 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2023-10-17 12:07:46 CASE.RUN BEGINS HERE 2023-10-17 12:07:46 RUN_MODEL BEGINS HERE 2023-10-17 12:07:46 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-10-17 12:07:47 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts 2023-10-17 12:07:47 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-10-17 12:07:47 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-10-17 12:07:47 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-10-17 12:07:47 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-10-17 12:07:47 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-10-17 12:07:47 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-10-17 12:07:47 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-10-17 12:07:47 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-10-17 12:07:47 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-10-17 12:07:47 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2023-10-17 12:07:47 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2023-10-17 12:07:47 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.exe >> e3sm.log.$LID 2>&1 2023-10-17 12:07:47 SAVE_PRERUN_PROVENANCE BEGINS HERE 2023-10-17 12:07:47 SAVE_PRERUN_PROVENANCE HAS FINISHED 2023-10-17 12:07:47 MODEL EXECUTION BEGINS HERE 2023-10-17 12:07:49 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/run/e3sm.log.231017-120746 Submitted job case.run with id None ARM97 was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + gzip -d projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.231017-113456.gz + cat projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.231017-113456 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts" -DCASETOOLS="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build" -DINCROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lib/include" -DLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys default -scam -nlev 72 -clubb_sgs -nadv 29 -rad rrtmg -chem trop_mam3 -silent -nlev 72 -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld real 2.14 user 1.19 sys 0.96 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/CMakeFiles /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' Scanning dependencies of target ocn make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build [ 0%] Generating buffer.F90 [ 1%] Generating restUtilMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/restUtilMod.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o Scanning dependencies of target ice make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build [ 1%] Generating physics_buffer.F90 [ 1%] Generating ncdio_pio.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/physics_buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/ncdio_pio.F90 [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o [ 1%] Generating subcol_utils.F90 [ 1%] Generating dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= [ 1%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 [ 1%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.095520 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.128613 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.137521 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o Scanning dependencies of target atm make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 1%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.114691 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.174847 seconds [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.394860 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.100152 seconds [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.198898 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90:25:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o built in 0.165126 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/landunit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o built in 0.097626 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_fileunits.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o built in 0.191318 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/ocn_comp_mct.mod cmake/ocn/CMakeFiles/ocn.dir/ocn_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library libocn.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && /usr/bin/cmake -P CMakeFiles/ocn.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && /usr/bin/cmake -E cmake_link_script CMakeFiles/ocn.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libocn.a 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o built in 0.168956 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffixed-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/mpishorthand.F -o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o Target libocn.a built in 0.003626 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 2%] Built target ocn [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o built in 0.099730 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_communicate.mod cmake/ice/CMakeFiles/ice.dir/ice_communicate.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_constants.mod cmake/ice/CMakeFiles/ice.dir/ice_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain_size.mod cmake/ice/CMakeFiles/ice.dir/ice_domain_size.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fileunits.mod cmake/ice/CMakeFiles/ice.dir/ice_fileunits.mod.stamp GNU [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_broadcast.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o built in 0.158430 seconds make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof/CMakeFiles/rof.dir/DependInfo.cmake --color= Target CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o built in 0.196911 seconds Scanning dependencies of target rof make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o built in 0.157495 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/namelist_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o [ 2%] Building Fortran object cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/rof/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.srof -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90 -o CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o Target CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o built in 0.124666 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/rof/rof_comp_mct.mod cmake/rof/CMakeFiles/rof.dir/rof_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library librof.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof && /usr/bin/cmake -P CMakeFiles/rof.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof && /usr/bin/cmake -E cmake_link_script CMakeFiles/rof.dir/link.txt --verbose=1 Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o built in 0.154777 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc librof.a CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o built in 0.199524 seconds Target librof.a built in 0.002995 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib librof.a Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o built in 0.263512 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_scam.mod cmake/ice/CMakeFiles/ice.dir/ice_scam.mod.stamp GNU Target librof.a built in 0.002943 seconds /usr/bin/cmake -E touch cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o.provides.build [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 3%] Built target rof /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o.provides.build [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SpeciesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o built in 0.155999 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/infnan.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.192051 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.176469 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o.provides.build [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varsur.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.159848 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o.provides.build [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_instance.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_exit.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o built in 0.199008 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_broadcast.mod cmake/ice/CMakeFiles/ice.dir/ice_broadcast.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o built in 0.110884 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o built in 0.158325 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_atmo.mod cmake/ice/CMakeFiles/ice.dir/ice_atmo.mod.stamp GNU [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_calendar.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o built in 0.209551 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_blocks.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o built in 0.158571 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.200560 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.146273 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/string_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.198970 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o built in 0.172840 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNBeTRIndicatorMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.205606 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.216515 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/params_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.166424 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/ll_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o built in 0.163743 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.351493 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.196018 seconds make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU Scanning dependencies of target glc make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_spacecurve.mod cmake/ice/CMakeFiles/ice.dir/ice_spacecurve.mod.stamp GNU [ 3%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o built in 0.217026 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.158654 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.118213 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o built in 0.113218 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o.provides.build [ 3%] Linking CXX static library libglc.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability_tools.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o Target libglc.a built in 0.002946 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a Target libglc.a built in 0.002939 seconds /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 3%] Built target glc /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 3%] Building Fortran object cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/wav/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.164505 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.116602 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.206676 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sort_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o Target CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o built in 0.114010 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/wav/wav_comp_mct.mod cmake/wav/CMakeFiles/wav.dir/wav_comp_mct.mod.stamp GNU [ 4%] Linking CXX static library libwav.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav && /usr/bin/cmake -P CMakeFiles/wav.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav && /usr/bin/cmake -E cmake_link_script CMakeFiles/wav.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libwav.a 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o Target libwav.a built in 0.002954 seconds /usr/bin/cmake -E touch cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 4%] Built target wav [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.203035 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.203997 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.160944 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.199873 seconds [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_varorb.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o built in 0.155384 seconds [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.155140 seconds make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 6%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_distribution.mod cmake/ice/CMakeFiles/ice.dir/ice_distribution.mod.stamp GNU [ 6%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.157053 seconds [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.118041 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o built in 0.195897 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o [ 6%] Linking CXX static library libiac.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac && /usr/bin/cmake -E cmake_link_script CMakeFiles/iac.dir/link.txt --verbose=1 /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90:32:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libiac.a CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target libiac.a built in 0.002952 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libiac.a Target libiac.a built in 0.002900 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 6%] Built target iac [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/cam_cpl_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o built in 0.153836 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.230509 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.371179 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_global_reductions.mod cmake/ice/CMakeFiles/ice.dir/ice_global_reductions.mod.stamp GNU [ 7%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o built in 0.157597 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o built in 0.240675 seconds [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/srf_field_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o built in 0.153086 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90:61:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.157675 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o built in 0.211413 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.229584 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.152535 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/error_function.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.166026 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o built in 0.197546 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.233674 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.155650 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_methods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o built in 0.203259 seconds make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp/CMakeFiles/esp.dir/DependInfo.cmake --color= Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.228848 seconds Scanning dependencies of target esp make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o [ 10%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.153677 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.103441 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU [ 10%] Linking CXX static library libesp.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target libesp.a built in 0.002973 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.153802 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o built in 0.208006 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o Target libesp.a built in 0.002887 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 10%] Built target esp [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.160655 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.156733 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.217411 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.192788 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.158096 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/m_sad_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.162354 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 1.720484 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.194851 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.164754 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.207842 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.197050 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_gather_scatter.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.164680 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.161946 seconds [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o built in 0.217358 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.132748 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.158462 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.154874 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o built in 0.194400 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.310737 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.573782 seconds [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.155264 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.159428 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.287782 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o built in 0.177697 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.154539 seconds [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.154055 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.120517 seconds [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.195487 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_pio.mod cmake/ice/CMakeFiles/ice.dir/ice_pio.mod.stamp GNU [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o built in 0.161648 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.194243 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.162295 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.156670 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o built in 0.199321 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.438247 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.158339 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.162177 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.239491 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.159340 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o built in 0.157409 seconds [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.190529 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.157248 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o built in 0.382776 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.244207 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.191952 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_read_write.mod cmake/ice/CMakeFiles/ice.dir/ice_read_write.mod.stamp GNU [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.155722 seconds [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.158090 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.195300 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.155490 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.227762 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.191496 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.155340 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.156965 seconds [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.433806 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.161927 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o built in 0.190988 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.158488 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.289320 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o built in 0.191650 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.160718 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.196169 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.156401 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.155371 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.191892 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.158268 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.193905 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.156445 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o built in 0.602519 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_grid.mod cmake/ice/CMakeFiles/ice.dir/ice_grid.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.193590 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.155625 seconds [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.191592 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.140715 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.154374 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.190505 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.157179 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.192853 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.167313 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.156892 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.198397 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.626192 seconds [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.194647 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.166292 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.159069 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.194176 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.158178 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.189684 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.156079 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.156771 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.191956 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.158320 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.158432 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.193074 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_ocean.mod cmake/ice/CMakeFiles/ice.dir/ice_ocean.mod.stamp GNU [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.197142 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o.provides.build [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o built in 0.156646 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.085229 seconds [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.190298 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o built in 0.160733 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varctl.mod.stamp GNU [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/landunit_varcon.mod.stamp GNU [ 18%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.193213 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.180717 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesconstantsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesconstantsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.190289 seconds Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.337714 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.170625 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_kind_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_kind_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/speciesmod.mod cmake/lnd/CMakeFiles/lnd.dir/speciesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varsur.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varsur.mod.stamp GNU [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.192173 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o built in 0.193198 seconds Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o built in 0.618517 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_remap.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_remap.mod.stamp GNU [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restart.mod cmake/ice/CMakeFiles/ice.dir/ice_restart.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_prescribed_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_prescribed_mod.mod.stamp GNU [ 20%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o built in 0.219903 seconds [ 20%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o built in 0.185364 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvemod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_nlutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_nlutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnbetrindicatormod.mod cmake/lnd/CMakeFiles/lnd.dir/cnbetrindicatormod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.179604 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_decompmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.222120 seconds [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.133430 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.154576 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.167386 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_meltpond.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.189923 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/error_code.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.164665 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.197045 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o built in 0.199608 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/model_flags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.159309 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.160839 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_pftvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_pftvarcontype.mod.stamp GNU [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.190178 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.266639 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o built in 0.543526 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.099828 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o built in 0.168263 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o built in 0.237583 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/topounit_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varorb.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varorb.mod.stamp GNU [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pbl_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o built in 0.284136 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o.provides.build [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_aerosol.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o built in 0.202910 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o built in 0.213616 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_finalizeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o.provides.build [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/trb_mtn_stress.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.470322 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o.provides.build [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o built in 0.158070 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice 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-DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/random_xgc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesswauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesswauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesnowauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesnowauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesnowauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesnowauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxmod.mod 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o built in 0.208421 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/srchutil.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90:26:0: #include <mpif.h> ! mpi library include file Warning: extra tokens at end of #include directive Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o built in 0.166181 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_mesh_utils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_mesh_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_shr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_shr_log_mod.mod.stamp 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o built in 0.839557 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_fields.mod cmake/ice/CMakeFiles/ice.dir/ice_history_fields.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_lvl.mod cmake/ice/CMakeFiles/ice.dir/ice_lvl.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_meltpond.mod cmake/ice/CMakeFiles/ice.dir/ice_meltpond.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_driver.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_driver.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o built in 0.202001 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_esmf.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_esmf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_import_export.mod cmake/ice/CMakeFiles/ice.dir/ice_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_aerosol.mod cmake/ice/CMakeFiles/ice.dir/ice_aerosol.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/getdatetime.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/marsaglia.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_age.mod cmake/ice/CMakeFiles/ice.dir/ice_age.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_vertical.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_vertical.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_history_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o built in 0.193705 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.166452 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/quicksort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o built in 0.205797 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o built in 0.169414 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o built in 0.370035 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o built in 0.216538 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/xpavg_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_diagnostics.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.269223 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.159535 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.198277 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.225572 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.192691 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.191142 seconds [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o built in 0.381517 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 0.791752 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.167674 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 0.962204 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.193731 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.212644 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.205197 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.209711 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o built in 1.004107 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o built in 0.230110 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.124415 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.107545 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_restoring.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o built in 0.226320 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_const_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_const_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_utils.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o built in 0.241780 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o built in 0.188131 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o built in 0.160935 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/btridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/btridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurveclapphornberg1978mod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurveclapphornberg1978mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_cpl_indices.mod cmake/lnd/CMakeFiles/lnd.dir/elm_cpl_indices.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_finalizemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_finalizemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o.provides.build /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o built in 0.180687 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxrecvtype.mod 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_RunMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o built in 0.204209 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o built in 3.638262 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.220844 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_step_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.212788 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.149922 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o built in 0.969463 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_init.mod cmake/ice/CMakeFiles/ice.dir/ice_init.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o built in 0.193026 seconds [ 26%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_test.cpp [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o built in 0.736378 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_runmod.mod cmake/ice/CMakeFiles/ice.dir/cice_runmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o.provides.build [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_InitMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o built in 0.210103 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatussimtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatussimtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o built in 5.121347 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o.provides.build [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o built in 0.162712 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/datetime.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o built in 0.195868 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o built in 0.791343 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_abortutils.mod cmake/atm/CMakeFiles/atm.dir/cam_abortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_logfile.mod cmake/atm/CMakeFiles/atm.dir/cam_logfile.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mpishorthand.mod cmake/atm/CMakeFiles/atm.dir/mpishorthand.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_utils.mod cmake/atm/CMakeFiles/atm.dir/namelist_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ppgrid.mod cmake/atm/CMakeFiles/atm.dir/ppgrid.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o built in 0.176034 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o.provides.build [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/units.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod cmake/atm/CMakeFiles/atm.dir/infnan.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o built in 0.811257 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_initmod.mod cmake/ice/CMakeFiles/ice.dir/cice_initmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.266868 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_instance.mod cmake/atm/CMakeFiles/atm.dir/cam_instance.mod.stamp GNU [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o built in 0.196894 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dycore.mod cmake/atm/CMakeFiles/atm.dir/dycore.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o built in 0.313926 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o built in 0.163838 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTGenericMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o built in 0.219786 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/column_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/column_varcon.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/kinds.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o built in 0.197741 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_nf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o [ 28%] Linking CXX static library libice.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && /usr/bin/cmake -P CMakeFiles/ice.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && /usr/bin/cmake -E cmake_link_script CMakeFiles/ice.dir/link.txt --verbose=1 python 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CMakeFiles/atm.dir/buffer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o built in 0.308515 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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cmake/lnd/betr_regression_module.mod cmake/lnd/CMakeFiles/lnd.dir/betr_regression_module.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radconstants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o built in 0.175256 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_sections.mod cmake/atm/CMakeFiles/atm.dir/sslt_sections.mod.stamp GNU /usr/bin/cmake 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/usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_methods.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_methods.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o built in 0.174319 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o.provides.build [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydrowtfmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydrowtfmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateslittermod.mod cmake/lnd/CMakeFiles/lnd.dir/fateslittermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtgenericmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtgenericmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o built in 0.214509 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.289415 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.219773 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.413713 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o built in 0.212482 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o built in 0.202655 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o built in 0.181834 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_factor.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_factor.mod.stamp GNU Target CMakeFiles/atm.dir/buffer.F90.o built in 1.335154 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_patchtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_patchtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/QSatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o built in 0.182119 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o built in 0.179909 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_aerocondtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_aerocondtype.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_inter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o built in 0.173939 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o built in 0.207611 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o.provides.build [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_schu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o built in 0.207096 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o.provides.build [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o.provides.build [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o built in 0.255668 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o built in 0.230321 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o built in 0.202421 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_zadj.mod cmake/atm/CMakeFiles/atm.dir/mo_zadj.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o built in 0.244581 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_sad_data.mod cmake/atm/CMakeFiles/atm.dir/m_sad_data.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o built in 0.210127 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spehox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o built in 0.221415 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jpl.mod cmake/atm/CMakeFiles/atm.dir/mo_jpl.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o built in 0.205368 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o built in 0.220833 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rxt_rates_conv.mod cmake/atm/CMakeFiles/atm.dir/mo_rxt_rates_conv.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o built in 0.216205 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_heatnirco2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o built in 0.199458 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sv_decomp.mod cmake/atm/CMakeFiles/atm.dir/sv_decomp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtlossfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtlossfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o.provides.build 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/ncdio_pio.F90 -o CMakeFiles/lnd.dir/ncdio_pio.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_sys_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_sys_mod.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNDecompCascadeConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mersennetwister.mod cmake/atm/CMakeFiles/atm.dir/mersennetwister.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeCon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o built in 0.162276 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_con.mod cmake/atm/CMakeFiles/atm.dir/rrlw_con.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o built in 0.206403 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrlw_vsn.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o built in 0.185926 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PlantMicKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o built in 0.799255 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrlw_cld.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg01.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg01.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg02.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg02.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg03.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg03.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o built in 0.262862 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg04.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg04.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg05.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg05.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 0.796053 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.196144 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.193950 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.281903 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.181396 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o built in 0.192423 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.197769 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.203097 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.190996 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.192147 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.190376 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.196390 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.207211 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o built in 0.181947 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.199317 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o built in 0.194387 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.192505 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.187992 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 1.378335 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.200840 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o built in 0.195941 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o built in 0.195401 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.227173 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_vrtqdr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_vrtqdr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakecon.mod cmake/lnd/CMakeFiles/lnd.dir/lakecon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_precision.mod cmake/atm/CMakeFiles/atm.dir/clubb_precision.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o built in 0.222366 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/tridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_code.mod cmake/atm/CMakeFiles/atm.dir/error_code.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_flags.mod cmake/atm/CMakeFiles/atm.dir/model_flags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantmickineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantmickineticsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameter_indices.mod cmake/atm/CMakeFiles/atm.dir/parameter_indices.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o built in 0.362188 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/babortutils.mod cmake/lnd/CMakeFiles/lnd.dir/babortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_interfaces.mod cmake/atm/CMakeFiles/atm.dir/lapack_interfaces.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_bgctype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_bgctype.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/penta_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o built in 0.262827 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_thtype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_thtype.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_utils.mod cmake/atm/CMakeFiles/atm.dir/physics_utils.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o built in 0.252815 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/diffusion_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/getglobalvaluesmod.mod cmake/lnd/CMakeFiles/lnd.dir/getglobalvaluesmod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/restUtilMod.F90 -o CMakeFiles/lnd.dir/restUtilMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o built in 0.209036 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edtypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edtypesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/random_xgc.mod cmake/atm/CMakeFiles/atm.dir/random_xgc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_assert_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_assert_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.405600 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o built in 0.468239 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o built in 0.355242 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/gauaw_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o built in 0.282044 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o built in 0.291448 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_dataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o built in 0.219742 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initverticalmod.mod cmake/lnd/CMakeFiles/lnd.dir/initverticalmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srchutil.mod cmake/atm/CMakeFiles/atm.dir/srchutil.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o.provides.build [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/vrtmap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o built in 0.207390 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o built in 0.266051 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.230279 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/restutilmod.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] Target CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o built in 0.168230 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o built in 0.398912 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesallometrymod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesallometrymod.mod.stamp GNU [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scyc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o built in 0.270342 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtracertype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtracertype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o built in 0.202999 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/kineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/kineticsmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o built in 0.510077 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_timemod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_timemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/code_timer_module.mod cmake/atm/CMakeFiles/atm.dir/code_timer_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_datatype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_datatype.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o built in 0.169695 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o built in 0.197884 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o.provides.build 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/soilorder_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o built in 0.212702 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanParamsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o built in 0.278705 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParametersInterface.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.397405 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/paramUtilMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o built in 0.297233 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.235527 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o built in 0.188439 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 0.708792 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.307080 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.169479 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.199117 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o built in 0.510577 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.164463 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.177242 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.193654 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.194666 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.241385 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o built in 0.219727 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o built in 0.317244 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerboundarycondtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerboundarycondtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.243183 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetwatisomod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetwatisomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 0.714919 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o built in 0.384080 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.241609 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.169086 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MEGANFactorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o built in 0.162064 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.579135 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/marsaglia.mod cmake/atm/CMakeFiles/atm.dir/marsaglia.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.250386 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quicksort.mod cmake/atm/CMakeFiles/atm.dir/quicksort.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.221828 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/sgexx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.207467 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.301213 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.165058 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o built in 0.178939 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initInterp.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o built in 0.361177 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BandDiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o built in 0.220001 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o.provides.build [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o built in 0.566872 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o built in 7.021540 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o.provides.build [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.164544 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 1.529557 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 0.671358 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.218392 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.478604 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.194623 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/bnddyi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.187003 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clm_time_manager.mod cmake/lnd/CMakeFiles/lnd.dir/clm_time_manager.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.207050 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.209840 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/AnnualFluxDribbler.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o built in 0.220133 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o built in 0.244041 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o built in 0.175549 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/fft99.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o built in 0.323620 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpatchstateupdatermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpatchstateupdatermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/units.mod cmake/atm/CMakeFiles/atm.dir/units.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilorder_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/soilorder_varcon.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o built in 0.912662 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanparamstype.mod cmake/lnd/CMakeFiles/lnd.dir/urbanparamstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparametersinterface.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparametersinterface.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/paramutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/paramutilmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o built in 0.394422 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o built in 0.218813 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o built in 0.237974 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdgathscatmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdgathscatmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/domainlateralmod.mod cmake/lnd/CMakeFiles/lnd.dir/domainlateralmod.mod.stamp GNU /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridRestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_wvn.mod cmake/atm/CMakeFiles/atm.dir/rrlw_wvn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_wvn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_wvn.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_aer.mod cmake/atm/CMakeFiles/atm.dir/rrsw_aer.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg16.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg16.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg21.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg21.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg22.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg22.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg23.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg23.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_nl_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_nl_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg24.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg24.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg25.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg25.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columnmod.mod cmake/lnd/CMakeFiles/lnd.dir/columnmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg26.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg26.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg27.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg27.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg28.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg28.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitmod.mod cmake/lnd/CMakeFiles/lnd.dir/landunitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/patchmod.mod cmake/lnd/CMakeFiles/lnd.dir/patchmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg29.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg29.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o.provides.build [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o built in 0.400115 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o.provides.build [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/accumulMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o built in 0.272642 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/pftvarcon.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.289893 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounittype.mod cmake/lnd/CMakeFiles/lnd.dir/topounittype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_reftra.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_reftra.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o built in 0.324119 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4varcon.mod cmake/lnd/CMakeFiles/lnd.dir/ch4varcon.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationPropertiesType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.305730 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o built in 0.221800 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o built in 0.690585 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/array_index.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o built in 0.174314 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/constants_clubb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o built in 0.616666 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtinitparamsfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtinitparamsfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyntimeinfomod.mod cmake/lnd/CMakeFiles/lnd.dir/dyntimeinfomod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o built in 0.199520 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/RootBiophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.197449 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_model.mod cmake/atm/CMakeFiles/atm.dir/parameters_model.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o built in 0.237835 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stat_file_module.mod cmake/atm/CMakeFiles/atm.dir/stat_file_module.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o built in 0.204772 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/penta_lu_solvers.mod cmake/atm/CMakeFiles/atm.dir/penta_lu_solvers.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.188535 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tridiag_lu_solvers.mod cmake/atm/CMakeFiles/atm.dir/tridiag_lu_solvers.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/filterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o built in 0.190423 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/endian.mod cmake/atm/CMakeFiles/atm.dir/endian.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o built in 0.257927 seconds [ 40%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o built in 0.341162 seconds [ 40%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o built in 0.246533 seconds [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.220403 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbalancemod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbalancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_5.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_5.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilordercontype.mod cmake/lnd/CMakeFiles/lnd.dir/soilordercontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_arrays.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_arrays.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/math_utilities.mod cmake/atm/CMakeFiles/atm.dir/math_utilities.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o built in 0.174028 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_silhs.mod cmake/atm/CMakeFiles/atm.dir/parameters_silhs.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.178119 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion_solver.mod cmake/atm/CMakeFiles/atm.dir/diffusion_solver.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o built in 0.760733 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.195432 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gauaw_mod.mod cmake/atm/CMakeFiles/atm.dir/gauaw_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o built in 0.182485 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 0.605332 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.184284 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.191470 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vrtmap_mod.mod cmake/atm/CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.186356 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.218917 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o built in 0.201564 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initSubgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o built in 0.240763 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scyc.mod cmake/atm/CMakeFiles/atm.dir/scyc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o built in 0.240707 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o.provides.build [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o built in 0.335361 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o.provides.build /usr/bin/cmake -E 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o built in 0.375141 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdutilsmod.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.188938 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o built in 0.191106 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpforctype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpforctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/odemod.mod cmake/lnd/CMakeFiles/lnd.dir/odemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/filtermod.mod cmake/lnd/CMakeFiles/lnd.dir/filtermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/transportmod.mod cmake/lnd/CMakeFiles/lnd.dir/transportmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o built in 0.647350 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o built in 0.208907 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o built in 0.205739 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bhistfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/bhistfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompinitmod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ComputeSeedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_datamod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o built in 0.205258 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sgexx.mod cmake/atm/CMakeFiles/atm.dir/sgexx.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initsubgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/initsubgridmod.mod.stamp GNU [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o built in 0.204499 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/drydep_mod.mod cmake/atm/CMakeFiles/atm.dir/drydep_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o.provides.build [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90:53:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o built in 0.222844 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o.provides.build 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o built in 0.613928 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridavemod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridavemod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDPftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.395780 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynfilemod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o built in 0.429631 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessizeagetypeindicesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessizeagetypeindicesmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o built in 0.221231 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o built in 0.321926 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.174073 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 0.720979 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o built in 0.321645 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o built in 0.506635 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_pflotranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o built in 0.269395 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_setcoef.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o built in 0.203441 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/diocplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprop.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopeplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopeplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_taumol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/mockplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/array_index.mod cmake/atm/CMakeFiles/atm.dir/array_index.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/computeseedmod.mod cmake/lnd/CMakeFiles/lnd.dir/computeseedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constants_clubb.mod cmake/atm/CMakeFiles/atm.dir/constants_clubb.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o built in 1.111366 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.454479 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o built in 0.759243 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o built in 0.222628 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.210228 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarMod.F90 -o CMakeFiles/lnd.dir/dynVarMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.374291 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.252767 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o built in 0.614143 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.214576 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o built in 1.234841 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o built in 0.362362 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o built in 1.868511 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.210755 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o built in 0.380091 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.212670 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpdecomptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpdecomptype.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_roots.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o built in 0.232173 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionsmod.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.216601 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgccnptype.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgccnptype.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o built in 0.214721 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_pflotranmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_pflotranmod.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_tsdadg_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o built in 1.418572 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o built in 0.249459 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 6.394423 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o built in 0.253346 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sigma_sqd_w_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.214002 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calendar.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o built in 0.563114 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.591300 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.221137 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.287805 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datamod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.238886 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scream_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.224091 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o built in 0.286336 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/histfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/histfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o.provides.build [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o.provides.build [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO 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seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o built in 0.241688 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplanthydraulicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplanthydraulicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparameterderivedmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparameterderivedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_utils.mod cmake/atm/CMakeFiles/atm.dir/spmd_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessoilbgcfluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessoilbgcfluxmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfmainmod.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_control_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o built in 0.214456 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o built in 0.715900 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.515268 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/EnergyFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o built in 0.393281 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ioFileMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o built in 0.251878 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o built in 0.227966 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sim_dat.mod cmake/atm/CMakeFiles/atm.dir/mo_sim_dat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_lw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_lw.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o built in 0.369210 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_setcoef.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_taumol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_sw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_sw.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o built in 0.371031 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o built in 0.225051 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SolarAbsorbedType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o built in 0.731933 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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-DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 0.257026 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 0.571702 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_tsdadg_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_tsdadg_pdf.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python 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cmake/atm/CMakeFiles/atm.dir/hydromet_pdf_parameter_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diagnose_correlations_module.mod cmake/atm/CMakeFiles/atm.dir/diagnose_correlations_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nc_ncn_eqns.mod cmake/atm/CMakeFiles/atm.dir/nc_ncn_eqns.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/est_kessler_microphys_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.519745 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/generate_uniform_sample_module.mod cmake/atm/CMakeFiles/atm.dir/generate_uniform_sample_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/transform_to_pdf_module.mod cmake/atm/CMakeFiles/atm.dir/transform_to_pdf_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scream_abortutils.mod cmake/atm/CMakeFiles/atm.dir/scream_abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o.provides.build [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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/usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o.provides.build [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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/usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.367298 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o.provides.build [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o.provides.build [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/physconst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o built in 0.472662 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_control_mod.mod cmake/atm/CMakeFiles/atm.dir/cam_control_mod.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o built in 0.492663 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_map_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_map_utils.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o built in 0.272592 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o built in 0.220155 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_manager.mod cmake/atm/CMakeFiles/atm.dir/time_manager.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o built in 0.230194 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iofilemod.mod cmake/atm/CMakeFiles/atm.dir/iofilemod.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/time_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o built in 0.356720 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o built in 0.473115 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/filenames.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o built in 0.199024 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o built in 0.201342 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/diocbgcreactionstype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopebgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopebgcreactionstype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o built in 0.244536 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/mockbgcreactionstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvmc.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o built in 0.309217 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod cmake/atm/CMakeFiles/atm.dir/file_functions.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glcDiagnosticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o built in 0.197141 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolation.mod cmake/atm/CMakeFiles/atm.dir/interpolation.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o built in 0.218523 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/saturation.mod cmake/atm/CMakeFiles/atm.dir/saturation.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o built in 9.146042 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.219953 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.228432 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o built in 0.215791 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.231439 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_solver_wrapper.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.199663 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o built in 0.254009 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 1.740966 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 2.063011 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_pdf.mod.stamp GNU [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.179095 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_reader.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o built in 0.183628 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_common.mod cmake/atm/CMakeFiles/atm.dir/gw_common.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.190458 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/est_kessler_microphys_module.mod cmake/atm/CMakeFiles/atm.dir/est_kessler_microphys_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_importance_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o built in 0.176121 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o built in 0.562351 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o built in 0.354620 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o built in 0.182117 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/CNStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o built in 0.373604 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.373416 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tsinti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o built in 0.314648 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o built in 0.197407 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod cmake/atm/CMakeFiles/atm.dir/physconst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/comsrf.mod cmake/atm/CMakeFiles/atm.dir/comsrf.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o built in 0.245923 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physical_constants.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o built in 0.190688 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/glb_verif_smry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o built in 1.109560 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_utils.mod cmake/atm/CMakeFiles/atm.dir/time_utils.mod.stamp GNU [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.453369 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/filenames.mod cmake/atm/CMakeFiles/atm.dir/filenames.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.522839 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 1.799980 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/orbit.mod cmake/atm/CMakeFiles/atm.dir/orbit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clmfatesparaminterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/clmfatesparaminterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o.provides.build [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.261468 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusfluxtype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o built in 0.195714 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o built in 0.210156 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.254393 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o built in 0.257012 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rad.mod.stamp GNU [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o built in 0.286655 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o built in 0.386462 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o built in 2.164546 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/energyfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/energyfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryinterfacemod.mod.stamp GNU [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o built in 0.710829 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitytype.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitytype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/grid_class.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o built in 0.429162 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_type_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesistype.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesistype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_variables.mod cmake/atm/CMakeFiles/atm.dir/stats_variables.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o built in 0.691303 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/soilstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/solarabsorbedtype.mod cmake/lnd/CMakeFiles/lnd.dir/solarabsorbedtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_solver_wrapper.mod cmake/atm/CMakeFiles/atm.dir/matrix_solver_wrapper.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf_main.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfacealbedotype.mod cmake/lnd/CMakeFiles/lnd.dir/surfacealbedotype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/topounitdatatype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj 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cmake/lnd/CMakeFiles/lnd.dir/lnd2atmtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologytype.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologytype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelldatatype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelldatatype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpnitdentype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpnitdentype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentsomtype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentsomtype.mod.stamp GNU [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o built in 0.292676 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o built in 0.535384 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/betrbgcmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.202321 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.339162 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.244618 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o built in 0.209153 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glcdiagnosticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/glcdiagnosticsmod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.207370 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/landunitdatatype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o built in 0.217543 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/sedfluxtype.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o built in 0.756954 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o.provides.build [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 2.087527 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeinterpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_reader.mod cmake/atm/CMakeFiles/atm.dir/input_reader.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.199704 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.185933 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_exchange.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_filter_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_filter_exchange.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_landunit_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_exchange.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 0.707272 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.207351 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o built in 0.390371 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbetrmod.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o built in 0.271209 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbasetype.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initGridCellsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.325811 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_oro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.258929 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/output_2D_samples_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o built in 0.246573 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o.provides.build /usr/bin/cmake -E touch 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/usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopystatetype.mod cmake/lnd/CMakeFiles/lnd.dir/canopystatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituents.mod cmake/atm/CMakeFiles/atm.dir/constituents.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonfluxtype.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physical_constants.mod cmake/atm/CMakeFiles/atm.dir/physical_constants.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_sediment_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_constants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/glb_verif_smry.mod cmake/atm/CMakeFiles/atm.dir/glb_verif_smry.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenfluxtype.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/quadrature_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o built in 0.194952 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o built in 0.301969 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndtype.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeuninterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeuninterpmod.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/gas_wetdep_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o built in 0.316648 seconds [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o built in 0.206098 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_saturation.mod cmake/atm/CMakeFiles/atm.dir/wv_saturation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_params.mod cmake/atm/CMakeFiles/atm.dir/mo_params.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbt.mod cmake/atm/CMakeFiles/atm.dir/hirsbt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_init.mod 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cmake/atm/CMakeFiles/atm.dir/stats_lh_sfc_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcohortdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edcohortdynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_zt_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edloggingmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/edloggingmortalitymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zt_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_sfc_module.mod cmake/atm/CMakeFiles/atm.dir/stats_sfc_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zm_module.mod.stamp GNU [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zt_module.mod.stamp GNU [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/corr_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o built in 0.819757 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/precipitation_fraction.mod cmake/atm/CMakeFiles/atm.dir/precipitation_fraction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_convect.mod cmake/atm/CMakeFiles/atm.dir/gw_convect.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacemod.mod 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o built in 0.338523 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o built in 0.488777 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_2d_samples_module.mod cmake/atm/CMakeFiles/atm.dir/output_2d_samples_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitymod.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitymod.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VerticalProfileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.498449 seconds /usr/bin/cmake -E touch 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cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o built in 0.274119 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_control.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o built in 0.356584 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quadrature_mod.mod cmake/atm/CMakeFiles/atm.dir/quadrature_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gas_wetdep_opts.mod cmake/atm/CMakeFiles/atm.dir/gas_wetdep_opts.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynlandunitareamod.mod 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-DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o built in 0.203373 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.209446 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reweightmod.mod cmake/lnd/CMakeFiles/lnd.dir/reweightmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.292345 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.199087 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.199668 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o built in 0.230193 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o built in 0.208291 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.205093 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_exchangemod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.295776 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_exchangemod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.207239 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.192703 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.198260 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.191070 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initgridcellsmod.mod cmake/lnd/CMakeFiles/lnd.dir/initgridcellsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o built in 0.257334 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.214039 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.288619 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o built in 0.276335 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.461922 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.234649 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.247319 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.396087 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.260281 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.270122 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/numerical_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o built in 0.250802 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o built in 0.216954 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o built in 0.203994 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Skx_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.491578 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/corr_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/corr_varnce_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lh_microphys_var_covar_module.mod cmake/atm/CMakeFiles/atm.dir/lh_microphys_var_covar_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o built in 0.384970 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenstatetype.mod.stamp GNU [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o built in 0.217013 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstatetype.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o built in 0.219908 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o built in 0.252292 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dimensions_mod.mod cmake/atm/CMakeFiles/atm.dir/dimensions_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_control.mod cmake/atm/CMakeFiles/atm.dir/phys_control.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/element_state.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o built in 0.264611 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chem_utls.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.573868 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airmas.mod cmake/atm/CMakeFiles/atm.dir/mo_airmas.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edphysiologymod.mod cmake/lnd/CMakeFiles/lnd.dir/edphysiologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveall.mod cmake/atm/CMakeFiles/atm.dir/mo_waveall.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveo3.mod cmake/atm/CMakeFiles/atm.dir/mo_waveo3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/verticalprofilemod.mod cmake/lnd/CMakeFiles/lnd.dir/verticalprofilemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o built in 0.208656 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ps2str.mod cmake/atm/CMakeFiles/atm.dir/mo_ps2str.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setair.mod cmake/atm/CMakeFiles/atm.dir/mo_setair.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lymana.mod cmake/atm/CMakeFiles/atm.dir/mo_lymana.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setcld.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelen.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelen.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_exchangemod.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o built in 0.210590 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelstubmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelstubmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o built in 0.210244 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.276413 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_helper_module.mod cmake/atm/CMakeFiles/atm.dir/advance_helper_module.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physics_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cldoptics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion.mod cmake/atm/CMakeFiles/atm.dir/diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmortalityfunctionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmortalityfunctionsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mean_adv.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o built in 0.208092 seconds [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o built in 0.234294 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/fill_holes.mod cmake/atm/CMakeFiles/atm.dir/fill_holes.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mono_flux_limiter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o built in 0.200311 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pos_definite_module.mod cmake/atm/CMakeFiles/atm.dir/pos_definite_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/turbulent_adv_pdf.mod cmake/atm/CMakeFiles/atm.dir/turbulent_adv_pdf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp3_module.mod.stamp GNU [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o built in 0.454191 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calc_pressure.mod cmake/atm/CMakeFiles/atm.dir/calc_pressure.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/numerical_check.mod cmake/atm/CMakeFiles/atm.dir/numerical_check.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/adg1_adg2_3d_luhar_pdf.mod cmake/atm/CMakeFiles/atm.dir/adg1_adg2_3d_luhar_pdf.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.293917 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/skx_module.mod cmake/atm/CMakeFiles/atm.dir/skx_module.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o built in 0.661197 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 1.375724 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o built in 0.247621 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_exchangemod.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o built in 0.316302 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpatchdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edpatchdynamicsmod.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 1.563814 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionscentecacnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionscentecacnptype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 0.861775 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInventoryInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o built in 0.463666 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.578375 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcanopystructuremod.mod cmake/lnd/CMakeFiles/lnd.dir/edcanopystructuremod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinventoryinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinventoryinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o built in 0.400664 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o built in 0.614079 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 3.044545 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.552411 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/applicationsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/applicationsfactory.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 0.796530 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o Target 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python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplantrespphotosynthmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplantrespphotosynthmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chem_utls.mod cmake/atm/CMakeFiles/atm.dir/mo_chem_utls.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.243818 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o built in 0.263467 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.379127 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.251183 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.327755 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/edinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_explicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o built in 0.205596 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o built in 0.313847 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mono_flux_limiter.mod cmake/atm/CMakeFiles/atm.dir/mono_flux_limiter.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mixing_length.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o built in 11.794651 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_closure_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o built in 0.563820 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columndatatype.mod cmake/lnd/CMakeFiles/lnd.dir/columndatatype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sfc_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/sfc_varnce_module.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o built in 1.414451 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_clubb_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_clubb_utilities.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.278680 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.261719 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_0.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 1.596769 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_utils.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.455391 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_driver_module.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_driver_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.432866 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.347279 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.422610 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 2.210856 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parallel_mod.mod cmake/atm/CMakeFiles/atm.dir/parallel_mod.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/charge_neutrality.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.288642 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mass_xforms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o built in 0.242024 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mean_mass.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o built in 0.226461 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rtlink.mod cmake/atm/CMakeFiles/atm.dir/mo_rtlink.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/set_cp.mod cmake/atm/CMakeFiles/atm.dir/set_cp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_explicit.mod cmake/atm/CMakeFiles/atm.dir/clip_explicit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mixing_length.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/setup_clubb_pdf_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o built in 0.848650 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o built in 0.325870 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.295392 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o built in 0.461633 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o built in 1.793098 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropharvestpoolsmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropharvestpoolsmod.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o built in 1.099487 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.273515 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceresistancemod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceresistancemod.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.202890 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittverttranspmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittverttranspmod.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o built in 0.253087 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosolmod.mod cmake/lnd/CMakeFiles/lnd.dir/aerosolmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod cmake/atm/CMakeFiles/atm.dir/charge_neutrality.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/drydepvelocity.mod cmake/lnd/CMakeFiles/lnd.dir/drydepvelocity.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mass_xforms.mod cmake/atm/CMakeFiles/atm.dir/mo_mass_xforms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dustmod.mod cmake/lnd/CMakeFiles/lnd.dir/dustmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mean_mass.mod cmake/atm/CMakeFiles/atm.dir/mo_mean_mass.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.213724 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.216840 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/erosionmod.mod cmake/lnd/CMakeFiles/lnd.dir/erosionmod.mod.stamp GNU [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_wp2_wp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o built in 0.843519 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 3.140305 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/setup_clubb_pdf_params.mod cmake/atm/CMakeFiles/atm.dir/setup_clubb_pdf_params.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_api_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_api_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterbudgetmod.mod cmake/lnd/CMakeFiles/lnd.dir/waterbudgetmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybrid_mod.mod cmake/atm/CMakeFiles/atm.dir/hybrid_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanalbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanalbedomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/control_mod.mod cmake/atm/CMakeFiles/atm.dir/control_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.209924 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/reduction_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o built in 2.737958 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o built in 0.302283 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.253390 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.304875 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod cmake/atm/CMakeFiles/atm.dir/gridgraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybvcoord_mod.mod cmake/atm/CMakeFiles/atm.dir/hybvcoord_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 10.874085 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.194483 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.399888 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.240753 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 0.787852 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.258190 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.284884 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.295600 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 9.751853 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.419295 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 0.584943 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 0.700550 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.317414 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.444213 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg2_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.440762 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.273531 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pmgrid.mod cmake/atm/CMakeFiles/atm.dir/pmgrid.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.315610 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_mod.mod cmake/atm/CMakeFiles/atm.dir/element_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GrowthRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.529688 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o built in 0.264189 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.274909 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.386927 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o built in 0.297641 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.276465 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.416317 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 0.748800 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o built in 0.194890 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 0.596433 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 0.541195 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 0.457019 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.377935 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o built in 0.296422 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o built in 0.304205 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 5.188275 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o built in 0.415896 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedtype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o built in 0.327477 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o built in 0.198644 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cube_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o built in 0.251847 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod_base.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 1.283598 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o built in 0.882416 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedtype_mod.mod cmake/atm/CMakeFiles/atm.dir/schedtype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cube_mod.mod cmake/atm/CMakeFiles/atm.dir/cube_mod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o built in 0.439011 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/element_ops.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.203977 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 0.563087 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o built in 0.478095 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.272122 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o built in 0.321107 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o built in 0.900802 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedule_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 0.556147 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.254015 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2glcMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.342999 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o built in 2.482740 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o.provides.build [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VOCEmissionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o built in 0.324425 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/precisioncontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/precisioncontrolmod.mod.stamp GNU [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o built in 0.566205 seconds [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edge_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 0.492325 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_ops.mod cmake/atm/CMakeFiles/atm.dir/element_ops.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zoltan_mod.mod cmake/atm/CMakeFiles/atm.dir/zoltan_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scalable_grid_init_mod.mod cmake/atm/CMakeFiles/atm.dir/scalable_grid_init_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geometry_mod.mod cmake/atm/CMakeFiles/atm.dir/geometry_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/imex_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o built in 1.497908 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystembalancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystembalancecheckmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gapmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/gapmortalitymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o.provides.build [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o built in 0.638010 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.245504 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridadjustmentsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridadjustmentsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o built in 0.945488 seconds /usr/bin/cmake -E cmake_copy_f90_mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TotalWaterAndHeatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o built in 0.228399 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o built in 1.943449 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.274138 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_derived_type_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 0.436914 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.286559 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o built in 0.238086 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.349612 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 0.613257 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o built in 0.258086 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 0.927819 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o built in 0.679525 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/imex_mod.mod cmake/atm/CMakeFiles/atm.dir/imex_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o built in 0.206711 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o built in 0.270146 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mesh_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o built in 0.463053 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o built in 0.299898 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_pio_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o built in 0.633773 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrifDenitrifMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowsnicarmod.mod cmake/lnd/CMakeFiles/lnd.dir/snowsnicarmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.201025 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/maintenancerespmod.mod cmake/lnd/CMakeFiles/lnd.dir/maintenancerespmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulation.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulation.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_pio_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_pio_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod.mod cmake/atm/CMakeFiles/atm.dir/edge_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/interpolate_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 0.469800 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_solar_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o built in 0.578751 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/solar_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o built in 0.260157 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/input_data_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o built in 0.818853 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_prop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o built in 0.318130 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 0.346241 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o built in 1.799260 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/activelayermod.mod cmake/lnd/CMakeFiles/lnd.dir/activelayermod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.238397 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/totalwaterandheatmod.mod cmake/lnd/CMakeFiles/lnd.dir/totalwaterandheatmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 0.551037 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.287039 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyninitcolumnsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dyninitcolumnsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_exchangemod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.299241 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.218153 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.334749 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o built in 0.770811 seconds Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.190796 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/snowhydrologymod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/bndry_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 0.548007 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.468293 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solar_data.mod cmake/atm/CMakeFiles/atm.dir/solar_data.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.463430 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_data_utils.mod cmake/atm/CMakeFiles/atm.dir/input_data_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_prop.mod cmake/atm/CMakeFiles/atm.dir/phys_prop.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mag_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o built in 0.201418 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/euvac.mod cmake/atm/CMakeFiles/atm.dir/euvac.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 0.675572 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o built in 1.215213 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_seto2.mod cmake/atm/CMakeFiles/atm.dir/mo_seto2.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/croptype.mod cmake/lnd/CMakeFiles/lnd.dir/croptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tuv_inti.mod cmake/atm/CMakeFiles/atm.dir/mo_tuv_inti.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elmfatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/elmfatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spedata.mod cmake/atm/CMakeFiles/atm.dir/spedata.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o built in 1.172309 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o built in 0.534529 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o built in 0.632952 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_initfiles.mod cmake/atm/CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rad_solar_var.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.206760 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o built in 0.223576 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_esmf.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o built in 0.520999 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_grid_support.mod cmake/atm/CMakeFiles/atm.dir/cam_grid_support.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod_base.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod_base.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ncdio_atm.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 0.739752 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mag_parms.mod cmake/atm/CMakeFiles/atm.dir/mag_parms.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 0.703892 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jshort.mod cmake/atm/CMakeFiles/atm.dir/mo_jshort.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o built in 0.494492 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jlong.mod cmake/atm/CMakeFiles/atm.dir/mo_jlong.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.228179 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o built in 0.479941 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceradiationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.368633 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.385159 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.195553 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 1.330782 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 0.670731 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_support.mod cmake/atm/CMakeFiles/atm.dir/cam_history_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 2.120052 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o built in 0.306331 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_theta.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.309705 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o built in 0.672331 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dyncropFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o built in 0.227223 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/baregroundfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/baregroundfluxesmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dof_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o built in 0.295927 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/global_norms_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o built in 0.250482 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o built in 0.350462 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakehydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/lakehydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/laketemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/laketemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o built in 0.322735 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hycoef.mod cmake/atm/CMakeFiles/atm.dir/hycoef.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate1mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AllocationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropmod.mod 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologyfluxlimitmod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologyfluxlimitmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.198257 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dof_mod.mod cmake/atm/CMakeFiles/atm.dir/dof_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.309824 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncropfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncropfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o built in 0.409786 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cg_mod.mod cmake/atm/CMakeFiles/atm.dir/cg_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_si_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_si_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o built in 0.196131 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/solver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.352174 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 1.614247 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 0.763882 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.255021 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 0.573872 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 1.575922 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sl_advection.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o built in 0.676310 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sl_advection.mod cmake/atm/CMakeFiles/atm.dir/sl_advection.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advection_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 0.804598 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_state_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_state_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advance_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o built in 0.218346 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o built in 4.052964 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/allocationmod.mod cmake/lnd/CMakeFiles/lnd.dir/allocationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o built in 1.420954 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 2.411828 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_driver_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o built in 1.396026 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnallocationbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnallocationbetrmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_implicit_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.184211 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o built in 0.726506 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/prim_driver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 1.126153 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_util_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 2.067265 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittdecompmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittdecompmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.194782 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o built in 0.552239 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o built in 0.449415 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_grid.mod cmake/atm/CMakeFiles/atm.dir/dyn_grid.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 0.727687 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 0.626316 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.302490 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/readparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/readparamsmod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ref_pres.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o built in 0.235024 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/namelist_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.384853 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopytemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/canopytemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_data_flux.mod cmake/atm/CMakeFiles/atm.dir/co2_data_flux.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ref_pres.mod cmake/atm/CMakeFiles/atm.dir/ref_pres.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_mod.mod cmake/atm/CMakeFiles/atm.dir/namelist_mod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers_suite.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o built in 1.519279 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian 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-DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/controlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o built in 1.969184 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o built in 1.656753 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_funcsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_funcsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod cmake/atm/CMakeFiles/atm.dir/phys_grid.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.270683 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.218669 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.345091 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/debug_info.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 0.696941 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.225492 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 1.107928 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.494473 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.369242 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers_suite.mod cmake/atm/CMakeFiles/atm.dir/tracers_suite.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.290112 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radae.mod cmake/atm/CMakeFiles/atm.dir/radae.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.466823 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.363021 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_import_export.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.229660 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o built in 1.105895 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.498907 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.214648 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.219949 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.216513 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_instmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_instmod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.330689 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o built in 1.193938 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 0.617373 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpftfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpftfilemod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/soil_erod_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o built in 0.570258 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o built in 0.239474 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pdepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/pdepstreammod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/polar_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o built in 0.627424 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/restfilemod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_synoz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o built in 1.177052 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_import_export.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_import_export.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sethet.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o built in 0.271857 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_msis_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o built in 0.279810 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o built in 0.729677 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.158940 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o built in 0.258516 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util 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CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.324649 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/module_perturb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o built in 0.583135 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 0.895788 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelvsfmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelvsfmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_types.mod cmake/atm/CMakeFiles/atm.dir/physics_types.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interp_mod.mod cmake/atm/CMakeFiles/atm.dir/interp_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sat_hist.mod cmake/atm/CMakeFiles/atm.dir/sat_hist.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusdynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/soil_erod_mod.mod cmake/atm/CMakeFiles/atm.dir/soil_erod_mod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/subcol_utils.F90 -o CMakeFiles/atm.dir/subcol_utils.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/polar_avg.mod cmake/atm/CMakeFiles/atm.dir/polar_avg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o built in 0.211974 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/dust_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.228958 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 2.130735 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/boundarydata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 0.898634 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sethet.mod cmake/atm/CMakeFiles/atm.dir/mo_sethet.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_msis_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_msis_ubc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_snoe.mod cmake/atm/CMakeFiles/atm.dir/mo_snoe.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 1.422703 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemDynMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o built in 0.595636 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.201868 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o built in 0.208755 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o built in 0.220123 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cld_sediment.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 2.600550 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gravity_waves_sources.mod cmake/atm/CMakeFiles/atm.dir/gravity_waves_sources.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o built in 1.321601 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soiltemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/soiltemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o.provides.build [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o.provides.build [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/init_hydrology.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o built in 0.342156 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/module_perturb.mod cmake/atm/CMakeFiles/atm.dir/module_perturb.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o built in 0.203106 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnecosystemdynbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnecosystemdynbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_model.mod cmake/atm/CMakeFiles/atm.dir/dust_model.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rayleigh_friction.mod cmake/atm/CMakeFiles/atm.dir/rayleigh_friction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cld_sediment.mod cmake/atm/CMakeFiles/atm.dir/pkg_cld_sediment.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o.provides.build /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/physics_buffer.F90 -o CMakeFiles/atm.dir/physics_buffer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.527798 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.144024 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologymod.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o built in 0.435007 seconds [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 1.650614 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyNoDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 0.746674 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o built in 0.302130 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_surfvals.mod cmake/atm/CMakeFiles/atm.dir/chem_surfvals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 2.462634 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.008849 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.219682 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologynodrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologynodrainagemod.mod.stamp GNU [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 2.750566 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.253855 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.517658 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.426302 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.267670 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 1.316332 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o built in 0.277584 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.240442 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 0.684280 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.219775 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.365758 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.209753 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/short_lived_species.mod cmake/atm/CMakeFiles/atm.dir/short_lived_species.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/read_volc_radiation_data.mod cmake/atm/CMakeFiles/atm.dir/read_volc_radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radheat.mod cmake/atm/CMakeFiles/atm.dir/radheat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/qbo.mod cmake/atm/CMakeFiles/atm.dir/qbo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 2.930274 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airglow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/clybry_fam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.326739 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airplane.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o built in 0.239023 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.316180 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.346772 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.228243 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.248211 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 0.632277 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 2.188051 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU [ 85%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o built in 0.484670 seconds [ 85%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.291715 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_neu_wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.154248 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o built in 0.432070 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_esmf.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_esmf.mod.stamp GNU [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/rate_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o built in 0.246622 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tropopause.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o built in 0.794135 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o built in 0.907948 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/slingo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o built in 0.472286 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o built in 1.275031 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_mct.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_mct.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.319846 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.334485 seconds [ 87%] Linking CXX static library liblnd.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /usr/bin/cmake -P CMakeFiles/lnd.dir/cmake_clean_target.cmake [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o Target liblnd.a built in 0.130660 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib liblnd.a Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o built in 0.238455 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target liblnd.a built in 0.130584 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.304867 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o [ 88%] Built target lnd [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/conv_water.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o built in 0.342351 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o built in 0.244853 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.389330 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o built in 0.330923 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/sslt_rebin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.266050 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o built in 0.285028 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o built in 0.290718 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.222793 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o built in 0.262072 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o.provides.build [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/forecast.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 1.153335 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o built in 0.327860 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o built in 0.471049 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.354757 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_rename.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_rename.mod.stamp GNU [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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cmake/atm/CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_rebin.mod cmake/atm/CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers.mod cmake/atm/CMakeFiles/atm.dir/tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_defaults.mod cmake/atm/CMakeFiles/atm.dir/history_defaults.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_scam.mod cmake/atm/CMakeFiles/atm.dir/history_scam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sox_cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/sox_cldaero_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_cycle.mod cmake/atm/CMakeFiles/atm.dir/co2_cycle.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_constituents.mod cmake/atm/CMakeFiles/atm.dir/rad_constituents.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_aerocom_aie.mod cmake/atm/CMakeFiles/atm.dir/output_aerocom_aie.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_wateruptake.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o built in 0.444301 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cfc11star.mod cmake/atm/CMakeFiles/atm.dir/cfc11star.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_apex.mod cmake/atm/CMakeFiles/atm.dir/mo_apex.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.550947 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_solarproton.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o built in 0.614031 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.229013 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.333850 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.354311 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldfrc2m.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o built in 0.856875 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o built in 0.345375 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o built in 0.310658 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.362912 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 0.708664 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.411836 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 1.184992 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.595137 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_gasaerexch.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_gasaerexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_newnuc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_newnuc.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_calcsize.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 0.842071 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o built in 0.928096 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_wateruptake.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_wateruptake.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o built in 1.375247 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solarproton.mod cmake/atm/CMakeFiles/atm.dir/mo_solarproton.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_rates.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_rates.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/exbdrift.mod cmake/atm/CMakeFiles/atm.dir/exbdrift.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv.mod cmake/atm/CMakeFiles/atm.dir/zm_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc_cam.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc_cam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop_bam.mod cmake/atm/CMakeFiles/atm.dir/ndrop_bam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice_cam.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setsox.mod cmake/atm/CMakeFiles/atm.dir/mo_setsox.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/camsrfexch.mod cmake/atm/CMakeFiles/atm.dir/camsrfexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_data.mod cmake/atm/CMakeFiles/atm.dir/tracer_data.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_drydep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o built in 0.999688 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_coag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 7.376026 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built in 0.738073 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.405424 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.603990 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.358348 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.441996 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.365255 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.411186 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.383934 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.294825 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.388152 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 1.589097 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.382104 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.302926 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.532945 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.417733 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.399224 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/cloud_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 0.706080 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.249063 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.426934 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o built in 0.481903 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 0.746385 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o built in 0.357602 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.388100 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.263554 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 0.730946 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o built in 0.556769 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o built in 0.344004 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iop_surf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o built in 0.593154 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_deposition.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o built in 0.214782 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_drydep.mod cmake/atm/CMakeFiles/atm.dir/mo_drydep.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o built in 0.982426 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/seasalt_model.mod cmake/atm/CMakeFiles/atm.dir/seasalt_model.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o built in 0.255557 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_srf_emissions.mod 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/usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU /usr/bin/cmake 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_shallow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o built in 0.439956 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv_intr.mod cmake/atm/CMakeFiles/atm.dir/zm_conv_intr.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/flux_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o built in 0.296308 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_drag.mod cmake/atm/CMakeFiles/atm.dir/gw_drag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_aero.mod cmake/atm/CMakeFiles/atm.dir/microp_aero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 0.703221 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_import_export.mod cmake/atm/CMakeFiles/atm.dir/atm_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 2.640919 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o built in 1.444098 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.543260 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.268436 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.302029 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.287131 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aer_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o built in 0.329988 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radlw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o built in 0.278705 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.448314 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hb_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o built in 0.672676 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat2m_macro.mod cmake/atm/CMakeFiles/atm.dir/cldwat2m_macro.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_shallow.mod cmake/atm/CMakeFiles/atm.dir/convect_shallow.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o built in 1.252796 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/stratiform.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.295880 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aerodep_flx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o built in 0.359183 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_amicphys.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_amicphys.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chlorine_loading_data.mod cmake/atm/CMakeFiles/atm.dir/chlorine_loading_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photoin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o built in 1.012465 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setext.mod cmake/atm/CMakeFiles/atm.dir/mo_setext.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/upper_bc.mod cmake/atm/CMakeFiles/atm.dir/upper_bc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radlw.mod cmake/atm/CMakeFiles/atm.dir/radlw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radsw.mod cmake/atm/CMakeFiles/atm.dir/radsw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hb_diff.mod cmake/atm/CMakeFiles/atm.dir/hb_diff.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/macrop_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o built in 0.379426 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_deep.mod cmake/atm/CMakeFiles/atm.dir/convect_deep.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 0.762434 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o built in 0.343088 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/stepon.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aerodep_flx.mod cmake/atm/CMakeFiles/atm.dir/aerodep_flx.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o built in 0.432284 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.367117 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.462006 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/molec_diff.mod cmake/atm/CMakeFiles/atm.dir/molec_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stepon.mod cmake/atm/CMakeFiles/atm.dir/stepon.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o built in 0.227969 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/llnl_o1d_to_2oh_adj.mod cmake/atm/CMakeFiles/atm.dir/llnl_o1d_to_2oh_adj.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 0.862370 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.542021 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o built in 0.878747 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/aero_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o built in 0.808299 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photo.mod cmake/atm/CMakeFiles/atm.dir/mo_photo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation.mod cmake/atm/CMakeFiles/atm.dir/radiation.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:87:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:88:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:49:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:48:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:50:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:47:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 0.963819 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.424079 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 1.714879 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_usrrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o built in 1.105861 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o built in 0.965636 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_gas_phase_chemdr.mod cmake/atm/CMakeFiles/atm.dir/mo_gas_phase_chemdr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L 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cmake/atm/CMakeFiles/atm.dir/mo_waccm_hrates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o built in 5.181798 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_intr.mod cmake/atm/CMakeFiles/atm.dir/clubb_intr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.432528 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 0.989438 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 1.612788 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.642771 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_interface.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o built in 1.348248 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cam_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o built in 0.757721 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_physics.mod cmake/atm/CMakeFiles/atm.dir/restart_physics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o built in 2.606130 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_interface.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_interface.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o built in 6.267428 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.527915 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inidat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o built in 0.593246 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inidat.mod cmake/atm/CMakeFiles/atm.dir/inidat.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/startup_initialconds.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o built in 0.330144 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/startup_initialconds.mod cmake/atm/CMakeFiles/atm.dir/startup_initialconds.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o built in 2.053557 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physpkg.mod cmake/atm/CMakeFiles/atm.dir/physpkg.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inital.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/restart_dynamics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o built in 0.318339 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inital.mod cmake/atm/CMakeFiles/atm.dir/inital.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o built in 0.558069 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_dynamics.mod cmake/atm/CMakeFiles/atm.dir/restart_dynamics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o built in 0.582072 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_restart.mod cmake/atm/CMakeFiles/atm.dir/cam_restart.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/runtime_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o built in 0.472522 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_comp.mod cmake/atm/CMakeFiles/atm.dir/cam_comp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o built in 0.554539 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/runtime_opts.mod cmake/atm/CMakeFiles/atm.dir/runtime_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o CMakeFiles/atm.dir/physics_buffer.F90.o CMakeFiles/atm.dir/subcol_utils.F90.o CMakeFiles/atm.dir/buffer.F90.o Target libatm.a built in 0.196026 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libatm.a Target libatm.a built in 0.211859 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 98%] Built target atm make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl/CMakeFiles/e3sm.exe.dir/DependInfo.cmake --color= Scanning dependencies of target e3sm.exe make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o built in 0.132325 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/t_drv_timers_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/t_drv_timers_mod.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o built in 0.150282 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.199579 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.426419 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.314613 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.174187 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 0.675130 seconds f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 0.710939 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.215607 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.152417 seconds [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.338921 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.140273 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o built in 0.229708 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.540694 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_atm_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_atm_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o built in 0.254532 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target 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cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o built in 0.432574 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_glc_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.421899 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 0.834921 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.209268 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.347108 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.362574 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90:39:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o built in 0.440105 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_rest_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_rest_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o built in 0.427716 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o built in 0.804312 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_hist_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_hist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o built in 1.553709 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cime_comp_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cime_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o built in 0.292906 seconds [100%] Linking Fortran executable /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && /usr/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -Wl,-rpath,/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.8.0-gfortran/lib CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe built in 1.339152 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/CMakeFiles 0 real 178.04 user 531.05 sys 121.74 [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*.gz' gzip: projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*.gz: No such file or directory [Pipeline] echo Not all logs were made for BOMEX. [Pipeline] sh + gzip -d projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.231017-114156.gz + cat projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.231017-114156 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts" -DCASETOOLS="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build" -DINCROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lib/include" -DLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys default -scam -nlev 72 -clubb_sgs -nadv 29 -rad rrtmg -chem trop_mam3 -silent -nlev 72 -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld real 1.88 user 1.07 sys 0.82 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/CMakeFiles /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= [ 1%] Generating restUtilMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/restUtilMod.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 1%] Generating buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/buffer.F90 Scanning dependencies of target ocn make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build [ 1%] Generating ncdio_pio.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/ncdio_pio.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 1%] Generating physics_buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/physics_buffer.F90 [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o Scanning dependencies of target ice make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 1%] Generating dynVarMod.F90 make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarMod.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 1%] Generating subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/subcol_utils.F90 [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o [ 1%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= [ 1%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.128763 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.170650 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.169583 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU Scanning dependencies of target atm /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 1%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.174493 seconds [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.120274 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.207207 seconds [ 1%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90:25:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.101557 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o built in 0.175808 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/landunit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o built in 0.100079 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_fileunits.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.651071 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o built in 0.200391 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffixed-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/mpishorthand.F -o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o built in 0.176455 seconds [ 2%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o built in 0.145103 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o built in 0.196800 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o built in 0.226294 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o built in 0.209014 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/ocn_comp_mct.mod cmake/ocn/CMakeFiles/ocn.dir/ocn_comp_mct.mod.stamp GNU [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o Target CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o built in 0.182779 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/rof/rof_comp_mct.mod cmake/rof/CMakeFiles/rof.dir/rof_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library librof.a cd 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o Target librof.a built in 0.003556 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SpeciesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.260611 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/infnan.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.201416 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o built in 0.215587 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o.provides.build [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varsur.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.183222 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o built in 0.228519 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 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cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_calendar.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o built in 0.211141 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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[ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o built in 0.197891 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.189717 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNBeTRIndicatorMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.212348 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.230341 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o built in 0.204063 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.212371 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/string_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.194004 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.251523 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/params_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.400981 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.275148 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_spacecurve.mod cmake/ice/CMakeFiles/ice.dir/ice_spacecurve.mod.stamp GNU [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/ll_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.181107 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o built in 0.133865 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.217293 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o.provides.build make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o.provides.build Scanning dependencies of target glc make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 3%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability_tools.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o built in 0.260159 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A 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/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.115134 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o built in 0.199499 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o [ 3%] Linking CXX static library libglc.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.136173 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build Target libglc.a built in 0.002944 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o Target libglc.a built in 0.002964 seconds /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 3%] Built target glc /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sort_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.248921 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.264028 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.250572 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.193984 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.271011 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_varorb.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o built in 0.185973 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/chem_mods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o built in 0.264701 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.200778 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o built in 0.764389 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_distribution.mod cmake/ice/CMakeFiles/ice.dir/ice_distribution.mod.stamp GNU [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o [ 5%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o built in 0.241487 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o.provides.build [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/cam_cpl_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.196481 seconds /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90:32:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.261776 seconds make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 5%] Building Fortran object cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/wav/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o built in 0.212259 seconds [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.400199 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_global_reductions.mod cmake/ice/CMakeFiles/ice.dir/ice_global_reductions.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o built in 0.318439 seconds Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o built in 0.258363 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o built in 0.208965 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.218847 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.305874 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.192516 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/error_function.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o built in 0.245951 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.191128 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.208972 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.325865 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o built in 0.187883 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.298306 seconds make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 8%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.siac -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90 -o CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.201903 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.127674 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU [ 8%] Linking CXX static library libiac.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac && /usr/bin/cmake -E cmake_link_script CMakeFiles/iac.dir/link.txt --verbose=1 Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o built in 0.279251 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libiac.a CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o Target libiac.a built in 0.003031 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libiac.a Target libiac.a built in 0.005110 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.231972 seconds [ 9%] Built target iac [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o built in 0.258354 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.194607 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 1.877577 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.274863 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o [ 9%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.181304 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.232098 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.196841 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.253494 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.190588 seconds [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_gather_scatter.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.227171 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.250260 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.201685 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.189678 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o built in 0.273732 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.190162 seconds [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.624964 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.402312 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.207935 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.153683 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.193972 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o built in 0.229354 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o.provides.build [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o built in 0.203182 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.194602 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.336690 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.137240 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.233449 seconds [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.185266 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.183178 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.240950 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.196016 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.473274 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o built in 0.208486 seconds [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.251006 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.321766 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.216598 seconds make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp/CMakeFiles/esp.dir/DependInfo.cmake --color= Scanning dependencies of target esp make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 13%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.197225 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o built in 0.426339 seconds Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.127905 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.245800 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o [ 13%] Linking CXX static library libesp.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target libesp.a built in 0.002986 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target libesp.a built in 0.002944 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 13%] Built target esp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.181562 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.204493 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.158660 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.159222 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.367827 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_read_write.mod cmake/ice/CMakeFiles/ice.dir/ice_read_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.220005 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o built in 0.179430 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o built in 0.232754 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.251861 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.179260 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o built in 0.213660 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.176828 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.203042 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.297999 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.155452 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.673673 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.198058 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.224522 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.221066 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.182222 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.192515 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.252859 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.187928 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.243011 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.196480 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o built in 0.644624 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_grid.mod cmake/ice/CMakeFiles/ice.dir/ice_grid.mod.stamp GNU [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.182732 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.234462 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.236543 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.203562 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.210393 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.242740 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.201453 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.235991 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.644406 seconds [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.215449 seconds [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.197312 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.225493 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.160302 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.199768 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.230072 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.224524 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.207617 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.194615 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.242369 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.199630 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.210186 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.246228 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.194264 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.203131 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.181176 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_ocean.mod cmake/ice/CMakeFiles/ice.dir/ice_ocean.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_remap.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_remap.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o built in 0.247206 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o.provides.build [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.204801 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.228707 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.198158 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.250204 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.204698 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.372403 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.245937 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o built in 0.180106 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.208278 seconds Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o built in 0.684741 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.233094 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o built in 0.193656 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varctl.mod.stamp GNU [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.268440 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesconstantsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesconstantsmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.244351 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.243731 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/error_code.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/model_flags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o built in 0.584551 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restart.mod cmake/ice/CMakeFiles/ice.dir/ice_restart.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_prescribed_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_prescribed_mod.mod.stamp GNU [ 20%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.194714 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_kind_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_kind_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/speciesmod.mod cmake/lnd/CMakeFiles/lnd.dir/speciesmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o built in 0.254647 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varsur.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varsur.mod.stamp GNU [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.193673 seconds [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.309532 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.171591 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.212125 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.176050 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_meltpond.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o built in 0.288980 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_driver.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_driver.mod.stamp GNU [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_names.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o built in 0.212480 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvemod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_nlutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_nlutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnbetrindicatormod.mod cmake/lnd/CMakeFiles/lnd.dir/cnbetrindicatormod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_decompmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o built in 0.264071 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.235795 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mt95.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o built in 0.225756 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.102767 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.190641 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o.provides.build [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pbl_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.208419 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o built in 0.311462 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o built in 0.255129 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_aerosol.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.215863 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.548490 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_age.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/trb_mtn_stress.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.217819 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o built in 0.222330 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_pftvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_pftvarcontype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o built in 0.243886 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_vertical.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o built in 0.404410 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vdiff_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/elm_cpl_indices.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o built in 0.338020 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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-DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o built in 0.193772 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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/usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o built in 0.288854 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o built in 0.255351 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/xpavg_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o built in 0.206659 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 0.889244 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o.provides.build [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/getdatetime.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.290462 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.284711 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.208463 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.233045 seconds [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o built in 0.190162 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.293993 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.180531 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o built in 1.080348 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.253385 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.142041 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.186401 seconds [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_slmm.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o built in 0.191674 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiodimensionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiodimensionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.212628 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 2.315799 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.236965 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.174171 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_restoring.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.288955 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o built in 0.306003 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.325426 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o built in 0.219471 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o built in 1.358072 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o built in 5.731837 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_step_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o built in 4.480071 seconds [ 26%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_test.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.319019 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.372539 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o built in 0.835268 seconds [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/datetime.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o built in 1.184527 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_init.mod cmake/ice/CMakeFiles/ice.dir/ice_init.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_runmod.mod cmake/ice/CMakeFiles/ice.dir/cice_runmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.243715 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_InitMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o built in 0.930605 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbasetype.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o built in 0.299763 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_abortutils.mod cmake/atm/CMakeFiles/atm.dir/cam_abortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_logfile.mod cmake/atm/CMakeFiles/atm.dir/cam_logfile.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mpishorthand.mod cmake/atm/CMakeFiles/atm.dir/mpishorthand.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_utils.mod cmake/atm/CMakeFiles/atm.dir/namelist_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ppgrid.mod cmake/atm/CMakeFiles/atm.dir/ppgrid.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/units.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o built in 0.310338 seconds [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o built in 0.268416 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatussimtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatussimtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o built in 0.269540 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod 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26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o built in 0.260259 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build /usr/bin/cmake -E touch 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/usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build [ 28%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o [ 28%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o built in 0.303725 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o built in 0.214971 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/kinds.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o built in 0.599162 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.306649 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/thread_mod.mod cmake/atm/CMakeFiles/atm.dir/thread_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/string_utils.mod cmake/atm/CMakeFiles/atm.dir/string_utils.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o built in 0.265965 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTGenericMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o built in 0.522973 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ll_mod.mod cmake/atm/CMakeFiles/atm.dir/ll_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/column_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/column_varcon.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o built in 0.358336 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/domain_mod.mod cmake/atm/CMakeFiles/atm.dir/domain_mod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o built in 0.976669 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sort_mod.mod cmake/atm/CMakeFiles/atm.dir/sort_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_mct.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_mct.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o built in 0.284399 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radconstants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o built in 0.258375 seconds /usr/bin/cmake -E cmake_copy_f90_mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o built in 0.323630 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_regression_module.mod cmake/lnd/CMakeFiles/lnd.dir/betr_regression_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_function.mod cmake/atm/CMakeFiles/atm.dir/error_function.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o built in 0.474611 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_methods.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_methods.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o.provides.build [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o built in 0.217136 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o built in 0.268699 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/centuryecaouttype.mod cmake/lnd/CMakeFiles/lnd.dir/centuryecaouttype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o built in 0.329834 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o.provides.build [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o built in 0.278172 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varcon.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydrowtfmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydrowtfmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateslittermod.mod cmake/lnd/CMakeFiles/lnd.dir/fateslittermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtgenericmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtgenericmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o built in 0.300993 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o built in 0.293766 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.375117 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_factor.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_factor.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o Target CMakeFiles/atm.dir/buffer.F90.o built in 1.537938 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.315444 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.557046 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o built in 0.256220 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o built in 0.302638 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_inter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o built in 0.280655 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_patchtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_patchtype.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_schu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o built in 0.235950 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o built in 0.230276 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o built in 0.265956 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o built in 0.284612 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o built in 0.278692 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o built in 0.244416 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o.provides.build [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o built in 0.274753 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o.provides.build [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg13.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg13.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg14.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PlantMicKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_con.mod cmake/atm/CMakeFiles/atm.dir/rrsw_con.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_vsn.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o built in 0.284075 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.236596 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o built in 0.444677 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrsw_cld.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 0.919608 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o built in 0.224854 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.268576 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o built in 0.279680 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.286922 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.350944 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.279152 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.300727 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.279812 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.279011 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.256893 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.253751 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.284224 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.268272 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o built in 0.245367 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 1.642719 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o built in 0.230198 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.238116 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.253727 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.232670 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/GetGlobalValuesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o built in 0.246239 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o built in 0.219753 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o built in 0.258978 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrsw_tbl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cndecompcascadecontype.mod cmake/lnd/CMakeFiles/lnd.dir/cndecompcascadecontype.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrsw_ref.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.257413 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o built in 0.233383 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakecon.mod cmake/lnd/CMakeFiles/lnd.dir/lakecon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_vrtqdr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_vrtqdr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/tridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_precision.mod cmake/atm/CMakeFiles/atm.dir/clubb_precision.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantmickineticsmod.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o built in 0.250118 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o built in 0.381099 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_bgctype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_bgctype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o built in 0.347488 seconds /usr/bin/cmake -E cmake_copy_f90_mod 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-DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/penta_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initVerticalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o built in 0.231068 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 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-DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/endian.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o built in 0.314989 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncolumntemplatemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncolumntemplatemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_names.mod cmake/atm/CMakeFiles/atm.dir/input_names.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpriorweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpriorweightsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mt95.mod cmake/atm/CMakeFiles/atm.dir/mt95.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynedmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pbl_utils.mod cmake/atm/CMakeFiles/atm.dir/pbl_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/trb_mtn_stress.mod cmake/atm/CMakeFiles/atm.dir/trb_mtn_stress.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_utils.mod cmake/atm/CMakeFiles/atm.dir/gw_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o built in 0.310655 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vdiff_lu_solver.mod cmake/atm/CMakeFiles/atm.dir/vdiff_lu_solver.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_utils.mod cmake/atm/CMakeFiles/atm.dir/physics_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o.provides.build /usr/bin/cmake -E touch 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-DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_5.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_arrays.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o built in 0.268267 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_timer_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_timer_mod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/math_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o built in 0.639126 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/getglobalvaluesmod.mod cmake/lnd/CMakeFiles/lnd.dir/getglobalvaluesmod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/restUtilMod.F90 -o CMakeFiles/lnd.dir/restUtilMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o built in 0.239245 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edtypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edtypesmod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/parameters_silhs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o built in 0.266381 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_assert_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_assert_mod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/diffusion_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o built in 0.312090 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.501294 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/random_xgc.mod cmake/atm/CMakeFiles/atm.dir/random_xgc.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o built in 0.569614 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_dataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o built in 0.225917 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o built in 0.359529 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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/usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srchutil.mod cmake/atm/CMakeFiles/atm.dir/srchutil.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.240738 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/restutilmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o built in 0.353856 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o built in 0.528786 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_datatype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_datatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o.provides.build [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o built in 0.219638 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o built in 0.206997 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o built in 0.277008 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o built in 0.277853 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/code_timer_module.mod cmake/atm/CMakeFiles/atm.dir/code_timer_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_string_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_string_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/abortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacetypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacetypesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_netcdf.mod cmake/atm/CMakeFiles/atm.dir/output_netcdf.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.440815 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/paramUtilMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.288164 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 0.740142 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.353508 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.273250 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.244866 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.190753 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o built in 0.620235 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.243126 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.222603 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.215473 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o built in 0.268506 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.289232 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o built in 0.391112 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.246804 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.244269 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.176559 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 1.179507 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MEGANFactorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.602804 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o built in 0.230108 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.363456 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.239763 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.426483 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.221538 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/marsaglia.mod cmake/atm/CMakeFiles/atm.dir/marsaglia.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.180235 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initInterp.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o built in 0.184114 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/sgexx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o built in 0.554225 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o built in 0.803102 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o built in 8.142767 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.192963 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.266175 seconds [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.214897 seconds [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.275953 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clm_time_manager.mod cmake/lnd/CMakeFiles/lnd.dir/clm_time_manager.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.706506 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 0.898602 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 1.655983 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/AnnualFluxDribbler.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o built in 1.024136 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o built in 0.325223 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/bnddyi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o built in 0.352463 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.220563 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpatchstateupdatermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpatchstateupdatermod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.241334 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilorder_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/soilorder_varcon.mod.stamp GNU [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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cmake_copy_f90_mod cmake/lnd/urbanparamstype.mod cmake/lnd/CMakeFiles/lnd.dir/urbanparamstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparametersinterface.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparametersinterface.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/paramutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/paramutilmod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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cmake/lnd/CMakeFiles/lnd.dir/columnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg27.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg27.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitmod.mod cmake/lnd/CMakeFiles/lnd.dir/landunitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg28.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg28.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/patchmod.mod cmake/lnd/CMakeFiles/lnd.dir/patchmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg29.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg29.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o.provides.build [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/accumulMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o built in 0.336997 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/pftvarcon.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.330019 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounittype.mod cmake/lnd/CMakeFiles/lnd.dir/topounittype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_reftra.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_reftra.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4varcon.mod cmake/lnd/CMakeFiles/lnd.dir/ch4varcon.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o built in 0.419940 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationPropertiesType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.374410 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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cmake_copy_f90_mod cmake/lnd/prtinitparamsfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtinitparamsfatesmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o built in 0.182523 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_model.mod cmake/atm/CMakeFiles/atm.dir/parameters_model.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/constants_clubb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o /usr/bin/cmake -E 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/RootBiophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.260934 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/endian.mod cmake/atm/CMakeFiles/atm.dir/endian.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o built in 0.249744 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o built in 0.287735 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.254048 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.274515 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o built in 0.295444 seconds [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o built in 0.366022 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/math_utilities.mod cmake/atm/CMakeFiles/atm.dir/math_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbalancemod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbalancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_silhs.mod 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o built in 0.219571 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gauaw_mod.mod cmake/atm/CMakeFiles/atm.dir/gauaw_mod.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.212426 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.187179 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.183036 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 0.793691 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.229722 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.240220 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.259648 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scyc.mod cmake/atm/CMakeFiles/atm.dir/scyc.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initSubgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o built in 0.271745 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o built in 0.316747 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o.provides.build [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o built in 0.393661 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o.provides.build /usr/bin/cmake -E touch 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.187548 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o built in 0.196420 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpforctype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpforctype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/odemod.mod cmake/lnd/CMakeFiles/lnd.dir/odemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/filtermod.mod cmake/lnd/CMakeFiles/lnd.dir/filtermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/transportmod.mod cmake/lnd/CMakeFiles/lnd.dir/transportmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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built in 0.213112 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_datamod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o built in 0.231459 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sgexx.mod cmake/atm/CMakeFiles/atm.dir/sgexx.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o built in 0.249460 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/buffer.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o built in 8.307792 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initsubgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/initsubgridmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o.provides.build [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o.provides.build [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj 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-DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridavemod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridavemod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDPftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.660659 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynfilemod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o built in 0.506484 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.194073 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 0.912511 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o built in 0.413450 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o built in 0.294551 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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/usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopeplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopeplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprop.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/mockplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_taumol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/computeseedmod.mod cmake/lnd/CMakeFiles/lnd.dir/computeseedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/array_index.mod cmake/atm/CMakeFiles/atm.dir/array_index.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o built in 0.884230 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.711822 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.242113 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.477690 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.233535 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarMod.F90 -o CMakeFiles/lnd.dir/dynVarMod.F90.o Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.278878 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o built in 1.121420 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o built in 2.152478 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.230374 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o built in 1.354206 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_roots.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.224027 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o built in 0.240843 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o built in 0.360439 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 7.233241 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o built in 0.387956 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.220213 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpdecomptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpdecomptype.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.286548 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.290990 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.316570 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o built in 0.594464 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.232589 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o built in 0.256551 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Nc_Ncn_eqns.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.902531 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_diffusion.mod cmake/atm/CMakeFiles/atm.dir/gw_diffusion.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o built in 0.220599 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datamod.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/transform_to_pdf_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o built in 0.581611 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scream_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.312269 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/histfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/histfilemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o built in 0.412541 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o.provides.build [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_paraminterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvarmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvarmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o.provides.build [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o built in 0.229225 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrn.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmr.mod.stamp GNU /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o built in 0.303850 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o built in 0.425416 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/interpolation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o built in 0.281565 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 0.310624 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 0.608434 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/est_kessler_microphys_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o built in 0.462032 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/generate_uniform_sample_module.mod cmake/atm/CMakeFiles/atm.dir/generate_uniform_sample_module.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o built in 0.305489 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/transform_to_pdf_module.mod cmake/atm/CMakeFiles/atm.dir/transform_to_pdf_module.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o built in 0.510249 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scream_abortutils.mod cmake/atm/CMakeFiles/atm.dir/scream_abortutils.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.521173 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o built in 1.087950 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o built in 0.276556 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o.provides.build /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o.provides.build [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/physconst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.512632 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_control_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o built in 0.499235 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o built in 0.274339 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o built in 0.390216 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o built in 0.430258 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.692225 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iofilemod.mod cmake/atm/CMakeFiles/atm.dir/iofilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o built in 0.222931 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod cmake/atm/CMakeFiles/atm.dir/file_functions.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolation.mod cmake/atm/CMakeFiles/atm.dir/interpolation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/saturation.mod cmake/atm/CMakeFiles/atm.dir/saturation.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o built in 0.683678 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.320560 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o built in 0.513251 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o built in 0.255865 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 2.355622 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glcDiagnosticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o built in 0.377105 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_importance_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o built in 0.349239 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o.provides.build [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o built in 0.254753 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o.provides.build [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o built in 0.286735 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o.provides.build [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o built in 0.473134 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.324508 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.294610 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod cmake/atm/CMakeFiles/atm.dir/physconst.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.265695 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_control_mod.mod cmake/atm/CMakeFiles/atm.dir/cam_control_mod.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.233435 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_map_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_map_utils.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o built in 0.434642 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o built in 0.234059 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 2.796754 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physical_constants.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.232054 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o built in 0.307788 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/glb_verif_smry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o built in 0.253308 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o built in 0.298252 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o.provides.build [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_manager.mod cmake/atm/CMakeFiles/atm.dir/time_manager.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o built in 0.234745 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o built in 0.246504 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o built in 0.269360 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.360774 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.528924 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/CNStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o built in 0.246208 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.460788 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.363447 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o built in 1.107826 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rad.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o built in 1.602094 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 2.019242 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/grid_class.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o built in 0.843788 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.591439 seconds Target CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o built in 0.331662 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-DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o built in 0.340485 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_grads.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o built in 0.554986 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edloggingmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/edloggingmortalitymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/energyfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/energyfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryinterfacemod.mod.stamp GNU Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 2.298713 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesistype.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesistype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.293297 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/soilstatetype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.313291 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.308184 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/topounitdatatype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o built in 0.299955 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterfluxtype.mod 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-DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_reader.mod cmake/atm/CMakeFiles/atm.dir/input_reader.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/waterstatetype.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o built in 1.020209 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakestatetype.mod cmake/lnd/CMakeFiles/lnd.dir/lakestatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o built in 0.500408 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 0.880465 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/betrbgcmod.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.378937 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.386369 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.357163 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glcdiagnosticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/glcdiagnosticsmod.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/output_2D_samples_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o built in 0.350029 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/landunitdatatype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_importance_sample_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_importance_sample_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/sedfluxtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o built in 0.312756 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeinterpmod.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o built in 1.576706 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.247966 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.227453 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbetrmod.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbasetype.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initGridCellsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o built in 0.243468 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_constants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.243572 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physical_constants.mod cmake/atm/CMakeFiles/atm.dir/physical_constants.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o built in 0.223339 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/glb_verif_smry.mod cmake/atm/CMakeFiles/atm.dir/glb_verif_smry.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/filenames.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch 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/usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/gas_wetdep_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o.provides.build /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbt.mod cmake/atm/CMakeFiles/atm.dir/hirsbt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_init.mod 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o built in 0.218381 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_zt_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zm_module.mod.stamp GNU /usr/bin/cmake -E 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/corr_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o built in 0.243369 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/precipitation_fraction.mod cmake/atm/CMakeFiles/atm.dir/precipitation_fraction.mod.stamp GNU [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o.provides.build [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/lh_microphys_var_covar_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o.provides.build [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitymod.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o.provides.build [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glc2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_constants.mod cmake/atm/CMakeFiles/atm.dir/mo_constants.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.574811 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o.provides.build [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.372124 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o built in 0.261187 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o built in 0.308619 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.257742 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_exchangemod.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.253930 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_exchangemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.239406 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.357158 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.278999 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.295439 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.248255 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.226283 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initgridcellsmod.mod cmake/lnd/CMakeFiles/lnd.dir/initgridcellsmod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o built in 0.345340 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.216898 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o.provides.build [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.255301 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o built in 0.390913 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.351939 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.583699 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.264006 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.337234 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.312304 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.502718 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.359778 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o built in 0.266538 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.652413 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lh_microphys_var_covar_module.mod cmake/atm/CMakeFiles/atm.dir/lh_microphys_var_covar_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmortalityfunctionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmortalityfunctionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o built in 0.540341 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edphysiologymod.mod cmake/lnd/CMakeFiles/lnd.dir/edphysiologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnptype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/verticalprofilemod.mod cmake/lnd/CMakeFiles/lnd.dir/verticalprofilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.652837 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dimensions_mod.mod cmake/atm/CMakeFiles/atm.dir/dimensions_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_control.mod cmake/atm/CMakeFiles/atm.dir/phys_control.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/element_state.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o built in 0.318194 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_exchangemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o built in 0.329368 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airmas.mod cmake/atm/CMakeFiles/atm.dir/mo_airmas.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chem_utls.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveall.mod cmake/atm/CMakeFiles/atm.dir/mo_waveall.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveo3.mod cmake/atm/CMakeFiles/atm.dir/mo_waveo3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelstubmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelstubmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ps2str.mod cmake/atm/CMakeFiles/atm.dir/mo_ps2str.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndmod.mod 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-DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setcld.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o built in 0.265119 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lymana.mod cmake/atm/CMakeFiles/atm.dir/mo_lymana.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelen.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelen.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o built in 0.284309 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonstatetype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.341061 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mono_flux_limiter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o built in 0.751479 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pos_definite_module.mod cmake/atm/CMakeFiles/atm.dir/pos_definite_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/turbulent_adv_pdf.mod cmake/atm/CMakeFiles/atm.dir/turbulent_adv_pdf.mod.stamp GNU [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o Target 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o built in 0.483448 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.314420 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o built in 0.270885 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpatchdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edpatchdynamicsmod.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 2.342831 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o built in 0.506238 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 1.781383 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionscentecacnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionscentecacnptype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.952696 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 1.244459 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInventoryInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o built in 0.657688 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o built in 0.716182 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcanopystructuremod.mod cmake/lnd/CMakeFiles/lnd.dir/edcanopystructuremod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinventoryinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinventoryinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/applicationsfactory.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 3.325642 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o built in 0.238218 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.463897 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o built in 0.238351 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/cldaero_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_common.mod cmake/atm/CMakeFiles/atm.dir/dust_common.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o built in 0.600807 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_state.mod cmake/atm/CMakeFiles/atm.dir/element_state.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.281877 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chem_utls.mod cmake/atm/CMakeFiles/atm.dir/mo_chem_utls.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.594054 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.347462 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o built in 0.285516 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o built in 13.674635 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.266845 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_explicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 1.340264 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mono_flux_limiter.mod cmake/atm/CMakeFiles/atm.dir/mono_flux_limiter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mixing_length.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_closure_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o built in 0.365538 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sfc_varnce_module.mod 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o built in 0.793761 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o built in 1.562954 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_0.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.450923 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_driver_module.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_driver_module.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.386900 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.558820 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 1.966611 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.532198 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.425963 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 2.599257 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parallel_mod.mod cmake/atm/CMakeFiles/atm.dir/parallel_mod.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/charge_neutrality.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.513770 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.419086 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mass_xforms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mean_mass.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o built in 0.308561 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o built in 0.331557 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o built in 0.306667 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_xsections.mod cmake/atm/CMakeFiles/atm.dir/mo_xsections.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rtlink.mod cmake/atm/CMakeFiles/atm.dir/mo_rtlink.mod.stamp 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o built in 1.012645 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.362218 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o built in 0.587623 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.292069 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.201887 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o.provides.build [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o built in 0.268179 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o built in 1.888100 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod cmake/atm/CMakeFiles/atm.dir/charge_neutrality.mod.stamp GNU [ 63%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.239236 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropharvestpoolsmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropharvestpoolsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mass_xforms.mod cmake/atm/CMakeFiles/atm.dir/mo_mass_xforms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceresistancemod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceresistancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mean_mass.mod cmake/atm/CMakeFiles/atm.dir/mo_mean_mass.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittverttranspmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittverttranspmod.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.216214 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosolmod.mod cmake/lnd/CMakeFiles/lnd.dir/aerosolmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o built in 1.923295 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/drydepvelocity.mod cmake/lnd/CMakeFiles/lnd.dir/drydepvelocity.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dustmod.mod cmake/lnd/CMakeFiles/lnd.dir/dustmod.mod.stamp GNU [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_wp2_wp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o built in 1.242446 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xm_wpxp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o built in 2.151758 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterbudgetmod.mod cmake/lnd/CMakeFiles/lnd.dir/waterbudgetmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanalbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanalbedomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybrid_mod.mod cmake/atm/CMakeFiles/atm.dir/hybrid_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/control_mod.mod cmake/atm/CMakeFiles/atm.dir/control_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.246687 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 5.416444 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.461300 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.314218 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod cmake/atm/CMakeFiles/atm.dir/gridgraph_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.312491 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.279145 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.329517 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 0.677111 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybvcoord_mod.mod cmake/atm/CMakeFiles/atm.dir/hybvcoord_mod.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.351298 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.481592 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pmgrid.mod cmake/atm/CMakeFiles/atm.dir/pmgrid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_mod.mod cmake/atm/CMakeFiles/atm.dir/element_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 0.823874 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.321995 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o built in 0.222109 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.425745 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o.provides.build [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o built in 0.288878 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedtype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o built in 0.238482 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cube_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 14.077583 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o built in 1.018075 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.470109 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod_base.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod_base.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.297208 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eos.mod cmake/atm/CMakeFiles/atm.dir/eos.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 0.874054 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.341675 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rgrid.mod cmake/atm/CMakeFiles/atm.dir/rgrid.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.454383 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mod.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 0.763393 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 18.061152 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o built in 0.367624 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.674644 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.370948 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.762345 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GrowthRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.408643 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o built in 0.346186 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.397408 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedtype_mod.mod cmake/atm/CMakeFiles/atm.dir/schedtype_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o built in 0.358835 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cube_mod.mod cmake/atm/CMakeFiles/atm.dir/cube_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 10.030495 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.723223 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/element_ops.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.528277 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.329957 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.384050 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 0.793752 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o built in 0.832475 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 0.709308 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 0.739235 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.299636 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedule_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 0.876647 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o built in 0.533241 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_clubb_core_module.mod cmake/atm/CMakeFiles/atm.dir/advance_clubb_core_module.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.473019 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg2_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o built in 0.546813 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o built in 0.743052 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/imex_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 0.872804 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/annualupdatemod.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o built in 0.386158 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/c14decaymod.mod cmake/lnd/CMakeFiles/lnd.dir/c14decaymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedule_mod.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 1.977234 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o built in 1.284317 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonisofluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonisofluxmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate2mod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_derived_type_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o built in 1.013782 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cngapmortalitybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cngapmortalitybetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate1betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate1betrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate2betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate2betrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate3betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate3betrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o built in 0.363481 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 0.655608 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o built in 0.710118 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o built in 0.773263 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o built in 0.339248 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o built in 0.289623 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o built in 2.832862 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o built in 1.533791 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o built in 0.304842 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2glcMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o built in 0.378294 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/imex_mod.mod cmake/atm/CMakeFiles/atm.dir/imex_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mesh_mod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o built in 0.404887 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VOCEmissionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o built in 0.430028 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_pio_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o built in 4.020906 seconds [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/edge_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.296895 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mesh_mod.mod 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod.mod cmake/atm/CMakeFiles/atm.dir/edge_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/interpolate_mod.F90 -o 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/bndry_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o built in 0.804524 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_pio_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_pio_utils.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o built in 1.918743 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate3mod.mod.stamp GNU [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o.provides.build [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.641105 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridadjustmentsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridadjustmentsmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.276481 seconds [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TotalWaterAndHeatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o built in 0.911525 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o built in 0.361883 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.367147 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/solar_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 0.651450 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/input_data_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.423397 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o built in 1.480160 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o built in 0.460771 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 0.552015 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_prop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.395034 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 0.919380 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.372161 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 1.126337 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 0.774155 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.429052 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.458243 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o built in 0.657124 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.518067 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.337945 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.282078 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_grid_support.mod cmake/atm/CMakeFiles/atm.dir/cam_grid_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod_base.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solar_parms.mod cmake/atm/CMakeFiles/atm.dir/mo_solar_parms.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o built in 0.258803 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o built in 0.980410 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_seto2.mod cmake/atm/CMakeFiles/atm.dir/mo_seto2.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4mod.mod cmake/lnd/CMakeFiles/lnd.dir/ch4mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tuv_inti.mod cmake/atm/CMakeFiles/atm.dir/mo_tuv_inti.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilmoiststressmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilmoiststressmod.mod.stamp 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrifDenitrifMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o built in 0.969592 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowsnicarmod.mod cmake/lnd/CMakeFiles/lnd.dir/snowsnicarmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/maintenancerespmod.mod cmake/lnd/CMakeFiles/lnd.dir/maintenancerespmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulation.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulation.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o built in 0.908124 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 0.786510 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_initfiles.mod cmake/atm/CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rad_solar_var.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_esmf.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/activelayermod.mod cmake/lnd/CMakeFiles/lnd.dir/activelayermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o built in 1.364646 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mag_parms.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.253054 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 1.264818 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.326788 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/snowhydrologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/lakefluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.621618 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 0.706476 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_support.mod cmake/atm/CMakeFiles/atm.dir/cam_history_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.848309 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.400984 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 0.800904 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_theta.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dof_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o built in 0.334455 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/global_norms_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o built in 0.403818 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o built in 0.456869 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hycoef.mod cmake/atm/CMakeFiles/atm.dir/hycoef.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/croptype.mod cmake/lnd/CMakeFiles/lnd.dir/croptype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elmfatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/elmfatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/pdelb0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o built in 0.569572 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o built in 0.689806 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.335643 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.330647 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.526277 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o built in 0.544563 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 1.195169 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cg_mod.mod cmake/atm/CMakeFiles/atm.dir/cg_mod.mod.stamp GNU [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o built in 0.342012 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_si_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_si_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/solver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 1.200427 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.502926 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o built in 0.853373 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceradiationmod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 1.163025 seconds [ 73%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 0.955329 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 2.694471 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.393418 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.540674 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 2.539020 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS 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cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 1.020369 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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built in 0.322603 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC 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-DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advection_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologyfluxlimitmod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologyfluxlimitmod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o built in 2.907692 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_driver_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 2.865041 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 3.904984 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegstructupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/vegstructupdatemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeophysmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.277671 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncropfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncropfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o built in 1.364684 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/prim_driver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o built in 0.891105 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_util_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.354891 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_grid.mod cmake/atm/CMakeFiles/atm.dir/dyn_grid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o built in 5.305057 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 1.038525 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/allocationmod.mod cmake/lnd/CMakeFiles/lnd.dir/allocationmod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ref_pres.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.548635 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/namelist_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 1.953354 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o built in 0.266978 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp GNU [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.511743 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o built in 1.612571 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_data_flux.mod cmake/atm/CMakeFiles/atm.dir/co2_data_flux.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ref_pres.mod cmake/atm/CMakeFiles/atm.dir/ref_pres.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnallocationbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnallocationbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_mod.mod cmake/atm/CMakeFiles/atm.dir/namelist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers_suite.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 1.250181 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radae.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o built in 3.225598 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittdecompmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittdecompmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o built in 0.343950 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.379261 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod cmake/atm/CMakeFiles/atm.dir/phys_grid.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.384777 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 1.316401 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.259058 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/debug_info.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.254004 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.569774 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers_suite.mod cmake/atm/CMakeFiles/atm.dir/tracers_suite.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radae.mod cmake/atm/CMakeFiles/atm.dir/radae.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.263158 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 4.065111 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.543593 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.335682 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.338940 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.310971 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.406852 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o built in 0.755664 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o built in 3.818550 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o built in 1.755219 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 1.120934 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/soil_erod_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o built in 1.758888 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_funcsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_funcsmod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/polar_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o built in 0.337451 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyfluxesmod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_synoz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o built in 1.023860 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/readparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/readparamsmod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sethet.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o built in 0.401484 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o.provides.build [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_msis_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 1.007427 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/controlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o built in 0.474028 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopytemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/canopytemperaturemod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o built in 0.419510 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_comp.mod cmake/atm/CMakeFiles/atm.dir/dyn_comp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug_util.mod cmake/atm/CMakeFiles/atm.dir/phys_debug_util.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hk_conv.mod cmake/atm/CMakeFiles/atm.dir/hk_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/debug_info.mod cmake/atm/CMakeFiles/atm.dir/debug_info.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat.mod cmake/atm/CMakeFiles/atm.dir/cldwat.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/gravity_waves_sources.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o built in 0.449775 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o built in 1.008883 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/module_perturb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_types.mod cmake/atm/CMakeFiles/atm.dir/physics_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interp_mod.mod cmake/atm/CMakeFiles/atm.dir/interp_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sat_hist.mod cmake/atm/CMakeFiles/atm.dir/sat_hist.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/subcol_utils.F90 -o CMakeFiles/atm.dir/subcol_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.407612 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/soil_erod_mod.mod cmake/atm/CMakeFiles/atm.dir/soil_erod_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/polar_avg.mod cmake/atm/CMakeFiles/atm.dir/polar_avg.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/dust_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o built in 0.338986 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/boundarydata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 1.256700 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.354842 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.594399 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sethet.mod cmake/atm/CMakeFiles/atm.dir/mo_sethet.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o built in 1.089139 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.501667 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_msis_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_msis_ubc.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 1.803174 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_snoe.mod cmake/atm/CMakeFiles/atm.dir/mo_snoe.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.516649 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_import_export.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o built in 1.562418 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.311998 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o built in 0.307696 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.702832 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpftfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpftfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o built in 0.352561 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_model.mod cmake/atm/CMakeFiles/atm.dir/dust_model.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o built in 0.848365 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/boundarydata.mod cmake/atm/CMakeFiles/atm.dir/boundarydata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/majorsp_diffusion.mod 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none 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cmake/atm/CMakeFiles/atm.dir/phys_gmean.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/physics_buffer.F90 -o CMakeFiles/atm.dir/physics_buffer.F90.o [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.252804 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.711063 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/satellitephenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/satellitephenologymod.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 1.479160 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o.provides.build [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o built in 1.014970 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 3.154038 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/restfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o built in 0.774898 seconds [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 3.580645 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 4.218184 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.533596 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o.provides.build [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.382066 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelvsfmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelvsfmmod.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.298640 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o.provides.build [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 1.589632 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.265920 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.299343 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 1.242169 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.630675 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.366266 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/read_volc_radiation_data.mod cmake/atm/CMakeFiles/atm.dir/read_volc_radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radheat.mod cmake/atm/CMakeFiles/atm.dir/radheat.mod.stamp GNU [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/init_hydrology.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.409006 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/qbo.mod cmake/atm/CMakeFiles/atm.dir/qbo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o built in 0.302744 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.903708 seconds [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemDynMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 3.659239 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/short_lived_species.mod cmake/atm/CMakeFiles/atm.dir/short_lived_species.mod.stamp GNU [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o built in 0.427021 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_surfvals.mod cmake/atm/CMakeFiles/atm.dir/chem_surfvals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.535080 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/clybry_fam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.536570 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.447130 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o built in 2.277940 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyNoDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o built in 2.542745 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnecosystemdynbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnecosystemdynbetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystemdynmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystemdynmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o.provides.build [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 1.022830 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.800087 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologynodrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologynodrainagemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 1.927514 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 3.483572 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.536152 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o built in 0.775420 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 1.708778 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o built in 1.351260 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/output_aerocom_aie.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.840872 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/cfc11star.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o built in 0.739007 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_apex.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o built in 0.432509 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airglow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o built in 0.421584 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airplane.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o built in 0.690248 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o built in 0.374164 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.468642 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.263238 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.280915 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o built in 0.536305 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.331006 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_neu_wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 1.152329 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o built in 0.556680 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/rate_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o built in 0.271170 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tropopause.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o built in 1.079088 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o built in 0.542314 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o built in 1.410799 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/slingo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.407073 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.408217 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituent_burden.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 3.919886 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU [ 88%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o built in 0.499913 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.410586 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build [ 88%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.234927 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o built in 0.362876 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_esmf.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_esmf.mod.stamp GNU [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o built in 0.574430 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o.provides.build [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/conv_water.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o built in 0.355636 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.653233 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.421276 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o built in 0.560889 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 90%] Built target lnd [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.264171 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o built in 0.288098 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o.provides.build [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/forecast.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o Target 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_calcsize.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 2.121501 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_aerocom_aie.mod cmake/atm/CMakeFiles/atm.dir/output_aerocom_aie.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_solarproton.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tropopause.mod cmake/atm/CMakeFiles/atm.dir/tropopause.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.275922 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ebert_curry.mod cmake/atm/CMakeFiles/atm.dir/ebert_curry.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/slingo.mod cmake/atm/CMakeFiles/atm.dir/slingo.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.413002 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aoa_tracers.mod cmake/atm/CMakeFiles/atm.dir/aoa_tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_ozone_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_ozone_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituent_burden.mod cmake/atm/CMakeFiles/atm.dir/constituent_burden.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tidal_diag.mod cmake/atm/CMakeFiles/atm.dir/tidal_diag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_fraction.mod cmake/atm/CMakeFiles/atm.dir/cloud_fraction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_cover_diags.mod cmake/atm/CMakeFiles/atm.dir/cloud_cover_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/conv_water.mod cmake/atm/CMakeFiles/atm.dir/conv_water.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_update_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_update_mod.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o built in 1.674479 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.438689 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.461840 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nudging.mod cmake/atm/CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_rebin.mod cmake/atm/CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers.mod cmake/atm/CMakeFiles/atm.dir/tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_defaults.mod cmake/atm/CMakeFiles/atm.dir/history_defaults.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_scam.mod cmake/atm/CMakeFiles/atm.dir/history_scam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 1.249885 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 1.830794 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.793120 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_coag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.447613 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 1.486787 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_wateruptake.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_wateruptake.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o built in 1.933497 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built in 0.816729 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solarproton.mod cmake/atm/CMakeFiles/atm.dir/mo_solarproton.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.373042 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/exbdrift.mod cmake/atm/CMakeFiles/atm.dir/exbdrift.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o built in 0.980439 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldfrc2m.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o built in 0.539866 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv.mod cmake/atm/CMakeFiles/atm.dir/zm_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc_cam.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc_cam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop_bam.mod cmake/atm/CMakeFiles/atm.dir/ndrop_bam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice_cam.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setsox.mod cmake/atm/CMakeFiles/atm.dir/mo_setsox.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/camsrfexch.mod cmake/atm/CMakeFiles/atm.dir/camsrfexch.mod.stamp GNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_drydep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o built in 0.475631 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 1.042270 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.456454 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.996268 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.495327 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.543068 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.611816 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_rates.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_rates.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.380436 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.618486 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 2.460899 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.474509 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.465466 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.500971 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 1.028790 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.813442 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aer_opt.mod cmake/atm/CMakeFiles/atm.dir/modal_aer_opt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.482108 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.359114 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 13.555899 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.738727 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.465525 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o built in 0.484749 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.409013 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o built in 0.824331 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 1.273803 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o built in 0.608648 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o built in 1.502525 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iop_surf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_deposition.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o built in 0.990650 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_drydep.mod cmake/atm/CMakeFiles/atm.dir/mo_drydep.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o built in 0.346739 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_convproc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o built in 0.413614 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/seasalt_model.mod cmake/atm/CMakeFiles/atm.dir/seasalt_model.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/linoz_data.mod cmake/atm/CMakeFiles/atm.dir/linoz_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_cnst.mod cmake/atm/CMakeFiles/atm.dir/tracer_cnst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_extfrc.mod cmake/atm/CMakeFiles/atm.dir/mo_extfrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lightning.mod cmake/atm/CMakeFiles/atm.dir/mo_lightning.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 3.209177 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o built in 0.765077 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_srf_emissions.mod cmake/atm/CMakeFiles/atm.dir/mo_srf_emissions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tgcm_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_tgcm_ubc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aer_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.580714 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/cloud_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o built in 1.928164 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cospsimulator_intr.mod cmake/atm/CMakeFiles/atm.dir/cospsimulator_intr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation_data.mod cmake/atm/CMakeFiles/atm.dir/radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_state.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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cmake/atm/gw_drag.mod cmake/atm/CMakeFiles/atm.dir/gw_drag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_aero.mod cmake/atm/CMakeFiles/atm.dir/microp_aero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 0.862725 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_import_export.mod cmake/atm/CMakeFiles/atm.dir/atm_import_export.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o built in 2.678644 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o built in 0.457858 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_amicphys.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_amicphys.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.711154 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.419088 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.416512 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.466562 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_rad_props.mod cmake/atm/CMakeFiles/atm.dir/cloud_rad_props.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radlw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o built in 0.465655 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hb_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o built in 0.397845 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_shallow.mod cmake/atm/CMakeFiles/atm.dir/convect_shallow.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.731686 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.481812 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/stepon.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 1.065755 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aerodep_flx.mod cmake/atm/CMakeFiles/atm.dir/aerodep_flx.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.598426 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o built in 0.736754 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o built in 0.350244 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.607080 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/molec_diff.mod cmake/atm/CMakeFiles/atm.dir/molec_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stepon.mod cmake/atm/CMakeFiles/atm.dir/stepon.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 1.201667 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.806927 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o built in 0.974630 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/aero_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o built in 1.524054 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photo.mod cmake/atm/CMakeFiles/atm.dir/mo_photo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation.mod cmake/atm/CMakeFiles/atm.dir/radiation.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 1.437121 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:87:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:88:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:49:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:48:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:50:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:47:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.454628 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 2.098000 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_usrrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o built in 0.995827 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o built in 0.962073 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_gas_phase_chemdr.mod cmake/atm/CMakeFiles/atm.dir/mo_gas_phase_chemdr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waccm_hrates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o built in 0.481505 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waccm_hrates.mod cmake/atm/CMakeFiles/atm.dir/mo_waccm_hrates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.340597 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o built in 5.857478 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_intr.mod cmake/atm/CMakeFiles/atm.dir/clubb_intr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 0.937445 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o built in 1.382602 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cam_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 1.826189 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.602936 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.361634 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/startup_initialconds.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o built in 0.247868 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/startup_initialconds.mod cmake/atm/CMakeFiles/atm.dir/startup_initialconds.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o built in 2.442895 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physpkg.mod cmake/atm/CMakeFiles/atm.dir/physpkg.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/restart_dynamics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inital.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o built in 0.273290 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inital.mod cmake/atm/CMakeFiles/atm.dir/inital.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o built in 0.595358 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_dynamics.mod cmake/atm/CMakeFiles/atm.dir/restart_dynamics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o built in 0.528479 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_restart.mod cmake/atm/CMakeFiles/atm.dir/cam_restart.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/runtime_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o built in 0.485957 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_comp.mod cmake/atm/CMakeFiles/atm.dir/cam_comp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o built in 0.599773 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/runtime_opts.mod cmake/atm/CMakeFiles/atm.dir/runtime_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 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'/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl/CMakeFiles/e3sm.exe.dir/DependInfo.cmake --color= Scanning dependencies of target e3sm.exe make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include 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/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include 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/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o built in 0.169277 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/t_drv_timers_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/t_drv_timers_mod.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o built in 0.188323 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.177001 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.517054 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.521081 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 0.816696 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.267961 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.368555 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.393103 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 1.476965 seconds [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.552721 seconds f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.237177 seconds [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o built in 0.374382 seconds f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o built in 0.435637 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o built in 0.432094 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cplcomp_exchange_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cplcomp_exchange_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.900746 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_atm_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_atm_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o built in 0.542340 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_glc_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o built in 0.227905 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_iac_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_iac_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.539068 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 0.941635 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.291486 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.449034 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.517555 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90:39:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o built in 0.535610 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_rest_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_rest_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o built in 0.561519 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o built in 1.059065 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_hist_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_hist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o built in 1.816705 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cime_comp_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cime_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o built in 0.237317 seconds [100%] Linking Fortran executable /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && /usr/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -Wl,-rpath,/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.8.0-gfortran/lib 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe built in 1.488372 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/CMakeFiles 0 real 234.30 user 681.80 sys 183.11 [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_DYCOMSrf01/run/atm.log.*.gz' gzip: projects/scratch/SCM_runs/test_DYCOMSrf01/run/atm.log.*.gz: No such file or directory [Pipeline] echo Not all logs were made for DYCOMSrf01. [Pipeline] sh + gzip -d projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.231017-115011.gz + cat projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.231017-115011 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts" -DCASETOOLS="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build" -DINCROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lib/include" -DLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys default -scam -nlev 72 -clubb_sgs -nadv 29 -rad rrtmg -chem trop_mam3 -silent -nlev 72 -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld real 1.62 user 0.94 sys 0.67 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/CMakeFiles /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 0%] Generating buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/buffer.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' Scanning dependencies of target ocn [ 1%] Generating restUtilMod.F90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/restUtilMod.F90 make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build [ 1%] Generating physics_buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/physics_buffer.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' Scanning dependencies of target ice make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 1%] Generating subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/subcol_utils.F90 [ 1%] Generating ncdio_pio.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/ncdio_pio.F90 [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= [ 1%] Generating dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarMod.F90 [ 1%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 [ 1%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.134943 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.189654 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.201871 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o Scanning dependencies of target atm make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 1%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.156145 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.212760 seconds [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.551676 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.266695 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.145829 seconds [ 1%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o [ 2%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90:25:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o built in 0.197582 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/landunit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o built in 0.119999 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_fileunits.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o built in 0.254326 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffixed-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/mpishorthand.F -o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o built in 0.224888 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o built in 0.128839 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o built in 0.308300 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/ocn_comp_mct.mod cmake/ocn/CMakeFiles/ocn.dir/ocn_comp_mct.mod.stamp GNU [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o [ 2%] Linking CXX static library libocn.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && /usr/bin/cmake -P CMakeFiles/ocn.dir/cmake_clean_target.cmake cd 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cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o built in 0.132570 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o.provides.build [ 2%] Built target ocn /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_communicate.mod cmake/ice/CMakeFiles/ice.dir/ice_communicate.mod.stamp GNU [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_broadcast.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o built in 0.280334 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o built in 0.231918 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o built in 0.225162 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/infnan.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o built in 0.341908 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_scam.mod cmake/ice/CMakeFiles/ice.dir/ice_scam.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o built in 0.228079 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.273434 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SpeciesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varsur.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o built in 0.288479 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_instance.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.270165 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o.provides.build [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_exit.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o built in 0.216274 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_broadcast.mod cmake/ice/CMakeFiles/ice.dir/ice_broadcast.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.224790 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o built in 0.280128 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o built in 0.162672 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_atmo.mod cmake/ice/CMakeFiles/ice.dir/ice_atmo.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_calendar.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o built in 0.216084 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_blocks.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o built in 0.234749 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNBeTRIndicatorMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.270373 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.197057 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/string_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.219106 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.280556 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.281223 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.303875 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o built in 0.243986 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/params_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/ll_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.238054 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.464598 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_spacecurve.mod cmake/ice/CMakeFiles/ice.dir/ice_spacecurve.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.296101 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o built in 0.314288 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.243045 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sort_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o built in 0.152735 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o.provides.build [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability_tools.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o built in 0.242702 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.293411 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.158582 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.289804 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.289795 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.279433 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o built in 0.264343 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/chem_mods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.242103 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o built in 0.237657 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_varorb.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o built in 0.296887 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.240330 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.331126 seconds [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/cam_cpl_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.230696 seconds make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof/CMakeFiles/rof.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o built in 0.959598 seconds Scanning dependencies of target rof make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_distribution.mod cmake/ice/CMakeFiles/ice.dir/ice_distribution.mod.stamp GNU make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 5%] Building Fortran object cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof && /usr/bin/cmake -P CMakeFiles/rof.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof && /usr/bin/cmake -E cmake_link_script CMakeFiles/rof.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc librof.a CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o Target librof.a built in 0.003170 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib librof.a Target librof.a built in 0.003136 seconds /usr/bin/cmake -E touch cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 6%] Built target rof [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.456889 seconds /usr/bin/cmake -E touch 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o built in 0.292595 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.327955 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o built in 0.293485 seconds [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/error_function.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.241602 seconds [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_methods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.235740 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.356200 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.242947 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.356216 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.234111 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o built in 0.221473 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o built in 0.292124 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.227583 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.227319 seconds make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o built in 0.313167 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o Scanning dependencies of target glc cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o [ 8%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.176522 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.224311 seconds [ 8%] Linking CXX static library libglc.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target libglc.a built in 0.005074 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.311516 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o Target libglc.a built in 0.003095 seconds /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 8%] Built target glc [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/m_sad_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.210133 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.284988 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.278409 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.219059 seconds Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 2.247464 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o [ 8%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.226584 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.272463 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.263429 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o built in 0.290527 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o [ 9%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_gather_scatter.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.203998 seconds [ 9%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.234338 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.187076 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.215041 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.455295 seconds [ 9%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.207052 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o built in 0.253643 seconds Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.734812 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o built in 0.287469 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.230258 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o [ 9%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.220317 seconds Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.170062 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.258762 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.369924 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.233758 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.238312 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.288584 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_pio.mod cmake/ice/CMakeFiles/ice.dir/ice_pio.mod.stamp GNU [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o built in 0.265207 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.545888 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.223314 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.281001 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o built in 0.230987 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.338351 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.214981 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o built in 0.504802 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.263316 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.340443 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_read_write.mod cmake/ice/CMakeFiles/ice.dir/ice_read_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.219635 seconds [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.280282 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.209531 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.295027 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.223927 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.271290 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.218890 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.640233 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o built in 0.269657 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.407651 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o built in 0.215598 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o built in 0.272094 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.257009 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.207048 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.227561 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.259518 seconds make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 12%] Building Fortran object cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/wav/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.270648 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o Target CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o built in 0.144463 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/wav/wav_comp_mct.mod cmake/wav/CMakeFiles/wav.dir/wav_comp_mct.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.218029 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o [ 13%] Linking CXX static library libwav.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav && /usr/bin/cmake -P CMakeFiles/wav.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav && /usr/bin/cmake -E cmake_link_script CMakeFiles/wav.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libwav.a CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target libwav.a built in 0.004584 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libwav.a Target libwav.a built in 0.004549 seconds /usr/bin/cmake -E touch cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 13%] Built target wav Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.279086 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.186849 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o built in 0.851041 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_grid.mod cmake/ice/CMakeFiles/ice.dir/ice_grid.mod.stamp GNU [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.221513 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.284793 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.277706 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.223687 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.228925 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.279642 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.288980 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.226454 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.830200 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.242412 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.215833 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.267650 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.292039 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.244136 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.275413 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.217288 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.275309 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.203282 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.222983 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.277893 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.226834 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.265480 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o built in 0.291229 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.210891 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_ocean.mod cmake/ice/CMakeFiles/ice.dir/ice_ocean.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.228305 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.268517 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.219423 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.229607 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.634412 seconds [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.227814 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.278357 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.275656 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.233326 seconds [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.248377 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.290943 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.243873 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o built in 0.269189 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.538282 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o built in 0.948485 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.226021 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_remap.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_remap.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restart.mod cmake/ice/CMakeFiles/ice.dir/ice_restart.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_prescribed_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_prescribed_mod.mod.stamp GNU [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.337274 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.243694 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/error_code.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.213725 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.313677 seconds [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.283892 seconds [ 19%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o built in 0.225312 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o built in 0.301031 seconds [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/model_flags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.206194 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.239849 seconds [ 19%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_meltpond.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o built in 0.240654 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varctl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/landunit_varcon.mod.stamp GNU [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.299480 seconds [ 19%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.387666 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.299278 seconds make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 19%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. 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CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.259087 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesconstantsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesconstantsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o built in 0.307665 seconds Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.158492 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_names.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o [ 20%] Linking CXX static library libiac.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac && /usr/bin/cmake -E cmake_link_script CMakeFiles/iac.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libiac.a CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target libiac.a built in 0.003274 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libiac.a Target libiac.a built in 0.003260 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 20%] Built target iac /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_kind_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_kind_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.250404 seconds make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp/CMakeFiles/esp.dir/DependInfo.cmake --color= /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/speciesmod.mod cmake/lnd/CMakeFiles/lnd.dir/speciesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varsur.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varsur.mod.stamp GNU Scanning dependencies of target esp make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o [ 22%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o built in 0.255042 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mt95.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o built in 0.764910 seconds Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.155658 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o [ 22%] Linking CXX static library libesp.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target libesp.a built in 0.004129 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o built in 0.305412 seconds Target libesp.a built in 0.003181 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.149226 seconds [ 22%] Built target esp /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvemod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvemod.mod.stamp GNU [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pbl_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o built in 0.300154 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_nlutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_nlutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnbetrindicatormod.mod cmake/lnd/CMakeFiles/lnd.dir/cnbetrindicatormod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_decompmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.623150 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o built in 0.308889 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/trb_mtn_stress.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o built in 0.447635 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o.provides.build [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_aerosol.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.227266 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.235713 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_age.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o built in 0.318733 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.202475 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o built in 0.250691 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_vertical.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o built in 0.266085 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vdiff_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.228559 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_pftvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_pftvarcontype.mod.stamp GNU [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o built in 0.768337 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o built in 0.418303 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/elm_cpl_indices.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o built in 1.084879 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_aerosol.mod cmake/ice/CMakeFiles/ice.dir/ice_aerosol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_age.mod cmake/ice/CMakeFiles/ice.dir/ice_age.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_vertical.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_vertical.mod.stamp GNU [ 23%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_history_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o built in 0.280301 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o built in 0.273734 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_finalizeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o built in 0.858467 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o built in 0.246398 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o built in 0.288881 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ecuyer_random.mod cmake/atm/CMakeFiles/atm.dir/ecuyer_random.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_netcdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o built in 0.525845 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o.provides.build /usr/bin/cmake -E touch 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-E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesswtype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesswtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesnowtype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesnowtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnthermalksptemperaturesoiltype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnthermalksptemperaturesoiltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/multiphysicsprobthermal.mod cmake/lnd/CMakeFiles/lnd.dir/multiphysicsprobthermal.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/systemofequationsthermalauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/systemofequationsthermalauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesnowauxtype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o built in 0.248019 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o built in 0.243382 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/arraydimthree.mod cmake/lnd/CMakeFiles/lnd.dir/arraydimthree.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/xpavg_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o /usr/bin/cmake -E touch 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.246602 seconds Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.251232 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90:26:0: #include <mpif.h> ! mpi library include file Warning: extra tokens at end of #include directive [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o built in 0.220681 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_mesh_utils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_mesh_utils.mod.stamp GNU [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_shr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_shr_log_mod.mod.stamp GNU /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.261815 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o.provides.build [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_slmm.cpp Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 1.193173 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o built in 0.243214 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/getdatetime.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.273196 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o built in 0.250463 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.418553 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 1.569829 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.237294 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.331461 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.236161 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o built in 1.628452 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o built in 0.241285 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiodimensionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiodimensionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.176733 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.157948 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.278996 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_restoring.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.320233 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o built in 4.317108 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o built in 0.373596 seconds [ 25%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.10.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.300100 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.344361 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o built in 0.877398 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o built in 0.341319 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o built in 1.072940 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restoring.mod cmake/ice/CMakeFiles/ice.dir/ice_restoring.mod.stamp GNU [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_init.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o built in 0.310713 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_const_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_const_mod.mod.stamp GNU /usr/bin/cmake 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o built in 6.567989 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o.provides.build [ 25%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o /usr/bin/cmake -E touch 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_RunMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_abortutils.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_step_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o built in 0.257350 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod cmake/atm/CMakeFiles/atm.dir/infnan.mod.stamp GNU /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landunittype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landunittype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varpar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/domainmod.mod cmake/lnd/CMakeFiles/lnd.dir/domainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesglobals.mod cmake/lnd/CMakeFiles/lnd.dir/fatesglobals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtparametersmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtparametersmod.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/column_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o built in 0.319479 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o built in 0.205842 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_infnan_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_infnan_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_log_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracer_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/tracer_varcon.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o built in 0.769851 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxrecvtype.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/kinds.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o built in 0.235260 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxtype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o built in 0.506660 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o built in 0.271137 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/thread_mod.mod cmake/atm/CMakeFiles/atm.dir/thread_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/string_utils.mod cmake/atm/CMakeFiles/atm.dir/string_utils.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_nf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o built in 0.252096 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/params_mod.mod cmake/atm/CMakeFiles/atm.dir/params_mod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.306161 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_init.mod cmake/ice/CMakeFiles/ice.dir/ice_init.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o built in 1.440655 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o.provides.build [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_InitMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o built in 0.349738 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ll_mod.mod cmake/atm/CMakeFiles/atm.dir/ll_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/domain_mod.mod cmake/atm/CMakeFiles/atm.dir/domain_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sort_mod.mod cmake/atm/CMakeFiles/atm.dir/sort_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_types.mod cmake/atm/CMakeFiles/atm.dir/m_types.mod.stamp GNU [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/geopotential.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.231699 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.304159 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pspect.mod cmake/atm/CMakeFiles/atm.dir/pspect.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbasetype.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/buffer.F90 -o CMakeFiles/atm.dir/buffer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o built in 0.284324 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o built in 0.261267 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radconstants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o built in 0.292383 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatussimtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatussimtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_sections.mod cmake/atm/CMakeFiles/atm.dir/sslt_sections.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o built in 0.311935 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_cpl_indices.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_spc_id.mod cmake/atm/CMakeFiles/atm.dir/m_spc_id.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_function.mod cmake/atm/CMakeFiles/atm.dir/error_function.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_methods.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_methods.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o.provides.build [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o built in 0.207187 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o built in 1.148753 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_initmod.mod cmake/ice/CMakeFiles/ice.dir/cice_initmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o.provides.build [ 28%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o built in 0.340463 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o built in 0.234379 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.346819 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o Target CMakeFiles/atm.dir/buffer.F90.o built in 1.621500 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o built in 0.302338 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o built in 0.197303 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o Target libice.a built in 0.025829 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libice.a Target libice.a built in 0.025866 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o built in 0.286838 seconds [ 28%] Built target ice /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiovariablekindmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiovariablekindmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o built in 0.268705 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o built in 0.281378 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o built in 0.287343 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonstaterecvtype.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o built in 0.558654 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_inter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_schu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o built in 0.290354 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenstaterecvtype.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o built in 0.292065 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_zadj.mod cmake/atm/CMakeFiles/atm.dir/mo_zadj.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/betr_varcon.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o built in 0.356471 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantnutkineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantnutkineticsmod.mod.stamp GNU [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_sad_data.mod cmake/atm/CMakeFiles/atm.dir/m_sad_data.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o built in 0.247755 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_regression_module.mod cmake/lnd/CMakeFiles/lnd.dir/betr_regression_module.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o built in 0.605928 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sv_decomp.mod cmake/atm/CMakeFiles/atm.dir/sv_decomp.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_rxt_id.mod cmake/atm/CMakeFiles/atm.dir/m_rxt_id.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o built in 0.288892 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.250831 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.389549 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o.provides.build [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.556593 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o.provides.build [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o built in 0.203778 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg02.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg02.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg03.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg03.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg04.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg04.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg05.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg05.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o built in 1.296175 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o built in 0.325310 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o built in 0.295472 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrsw_cld.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.269207 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtlossfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtlossfluxesmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.294537 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o built in 0.256243 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o built in 0.270434 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryvariabletype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.280450 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartvariablemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartvariablemod.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o built in 0.489044 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeostatetype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeostatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_columntype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_columntype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/biogeocontype.mod cmake/lnd/CMakeFiles/lnd.dir/biogeocontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/qsatmod.mod cmake/lnd/CMakeFiles/lnd.dir/qsatmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.286923 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o.provides.build [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columntype.mod cmake/lnd/CMakeFiles/lnd.dir/columntype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelltype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelltype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.281037 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunittype.mod cmake/lnd/CMakeFiles/lnd.dir/landunittype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.277022 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationtype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationtype.mod.stamp GNU [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/ncdio_pio.F90 -o CMakeFiles/lnd.dir/ncdio_pio.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.269861 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydraulicsmemmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydraulicsmemmod.mod.stamp GNU [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.290934 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNDecompCascadeConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o built in 0.309971 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_sys_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_sys_mod.mod.stamp GNU [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.308247 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeCon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o built in 0.331419 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.276603 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o built in 0.242960 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.256846 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o built in 0.265262 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PlantMicKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 1.072331 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o built in 0.264432 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o built in 0.357923 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrsw_tbl.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o built in 0.367492 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrsw_ref.mod.stamp GNU [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o built in 0.303601 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o built in 0.257674 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_vrtqdr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_vrtqdr.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o built in 0.292602 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_precision.mod cmake/atm/CMakeFiles/atm.dir/clubb_precision.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_code.mod cmake/atm/CMakeFiles/atm.dir/error_code.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_flags.mod cmake/atm/CMakeFiles/atm.dir/model_flags.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.257894 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameter_indices.mod cmake/atm/CMakeFiles/atm.dir/parameter_indices.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.392369 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.225394 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_interfaces.mod cmake/atm/CMakeFiles/atm.dir/lapack_interfaces.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o built in 0.294338 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/penta_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o built in 0.282674 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.258978 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/tridiag_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o built in 0.243315 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/endian.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o built in 0.418604 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_names.mod cmake/atm/CMakeFiles/atm.dir/input_names.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mt95.mod cmake/atm/CMakeFiles/atm.dir/mt95.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pbl_utils.mod cmake/atm/CMakeFiles/atm.dir/pbl_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/trb_mtn_stress.mod cmake/atm/CMakeFiles/atm.dir/trb_mtn_stress.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_utils.mod cmake/atm/CMakeFiles/atm.dir/gw_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vdiff_lu_solver.mod cmake/atm/CMakeFiles/atm.dir/vdiff_lu_solver.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o built in 0.285167 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o built in 0.374055 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_utils.mod cmake/atm/CMakeFiles/atm.dir/physics_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_5.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_data.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_data.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/GetGlobalValuesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o built in 0.289785 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_arrays.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.334825 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/math_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 1.910045 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o built in 0.289311 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cndecompcascadecontype.mod cmake/lnd/CMakeFiles/lnd.dir/cndecompcascadecontype.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util 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cmake/lnd/lakecon.mod cmake/lnd/CMakeFiles/lnd.dir/lakecon.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/parameters_silhs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o built in 0.519824 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o built in 0.381715 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/tridiagonalmod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/diffusion_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantmickineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantmickineticsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o built in 0.245231 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/babortutils.mod cmake/lnd/CMakeFiles/lnd.dir/babortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/random_xgc.mod cmake/atm/CMakeFiles/atm.dir/random_xgc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_bgctype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_bgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_thtype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_thtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/getglobalvaluesmod.mod cmake/lnd/CMakeFiles/lnd.dir/getglobalvaluesmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o built in 0.806564 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/restUtilMod.F90 -o CMakeFiles/lnd.dir/restUtilMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edtypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edtypesmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.298129 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_assert_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_assert_mod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scyc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o built in 0.295394 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o built in 0.459775 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o.provides.build Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.571351 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o built in 0.375460 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/code_timer_module.mod cmake/atm/CMakeFiles/atm.dir/code_timer_module.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] Target CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o built in 0.198527 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/kineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/kineticsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_timemod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_timemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o built in 0.363207 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_datatype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_datatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o built in 0.675284 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_time_manager.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.355143 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/soilorder_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o built in 0.391991 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanParamsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.533768 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParametersInterface.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o built in 0.292420 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.284009 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o built in 0.290010 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 0.965860 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.521367 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.284432 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/marsaglia.mod cmake/atm/CMakeFiles/atm.dir/marsaglia.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.265954 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o built in 0.621376 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quicksort.mod cmake/atm/CMakeFiles/atm.dir/quicksort.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.246587 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/sgexx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.283504 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.270433 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.309260 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.335156 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o built in 0.345457 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o built in 0.430481 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerboundarycondtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerboundarycondtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o built in 0.514916 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 0.944259 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 2.042714 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetmod.mod.stamp GNU [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o built in 0.503043 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetwatisomod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetwatisomod.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.276540 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.597431 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.213076 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 1.118020 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o built in 0.195014 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.818955 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MEGANFactorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.283760 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.337254 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/bnddyi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.314056 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.318579 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.241392 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.506098 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.251494 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o built in 0.536770 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o built in 0.451479 seconds [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/fft99.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o built in 0.292675 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initInterp.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o built in 0.658054 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/time_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.281271 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o built in 0.304319 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o built in 13.860112 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.341884 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geopotential.mod cmake/atm/CMakeFiles/atm.dir/geopotential.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.316624 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/buffer.mod cmake/atm/CMakeFiles/atm.dir/buffer.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clm_time_manager.mod cmake/lnd/CMakeFiles/lnd.dir/clm_time_manager.mod.stamp GNU [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tracname.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radconstants.mod cmake/atm/CMakeFiles/atm.dir/radconstants.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.292603 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o.provides.build [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o built in 0.313392 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o built in 0.312918 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_schu.mod cmake/atm/CMakeFiles/atm.dir/mo_schu.mod.stamp GNU [ 38%] Building Fortran object 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0.364765 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridRestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/banddiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/banddiagonalmod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o built in 0.436332 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o.provides.build [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.461029 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_reftra.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_reftra.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o built in 0.576606 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o.provides.build [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_nl_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_nl_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columnmod.mod cmake/lnd/CMakeFiles/lnd.dir/columnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitmod.mod cmake/lnd/CMakeFiles/lnd.dir/landunitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/patchmod.mod cmake/lnd/CMakeFiles/lnd.dir/patchmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.496781 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o.provides.build [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/array_index.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/accumulMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o built in 0.278277 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/pftvarcon.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/constants_clubb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o built in 0.458204 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounittype.mod cmake/lnd/CMakeFiles/lnd.dir/topounittype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4varcon.mod cmake/lnd/CMakeFiles/lnd.dir/ch4varcon.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationPropertiesType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.296685 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o built in 1.122707 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o built in 0.230319 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_model.mod cmake/atm/CMakeFiles/atm.dir/parameters_model.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtinitparamsfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtinitparamsfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stat_file_module.mod cmake/atm/CMakeFiles/atm.dir/stat_file_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfparamsmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o built in 0.317041 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/penta_lu_solvers.mod cmake/atm/CMakeFiles/atm.dir/penta_lu_solvers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tridiag_lu_solvers.mod cmake/atm/CMakeFiles/atm.dir/tridiag_lu_solvers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyntimeinfomod.mod cmake/lnd/CMakeFiles/lnd.dir/dyntimeinfomod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/RootBiophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o built in 0.811324 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o built in 0.315404 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/endian.mod cmake/atm/CMakeFiles/atm.dir/endian.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o built in 0.325743 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.263527 seconds [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.317409 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o built in 0.334156 seconds [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/filterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o built in 9.989982 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_5.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_5.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_arrays.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_arrays.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/math_utilities.mod cmake/atm/CMakeFiles/atm.dir/math_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_silhs.mod cmake/atm/CMakeFiles/atm.dir/parameters_silhs.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion_solver.mod cmake/atm/CMakeFiles/atm.dir/diffusion_solver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gauaw_mod.mod cmake/atm/CMakeFiles/atm.dir/gauaw_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vrtmap_mod.mod cmake/atm/CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scyc.mod cmake/atm/CMakeFiles/atm.dir/scyc.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o built in 0.270946 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o.provides.build [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o built in 0.348803 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprop.mod.stamp GNU [ 42%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o built in 0.254076 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbalancemod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbalancemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilordercontype.mod cmake/lnd/CMakeFiles/lnd.dir/soilordercontype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o built in 0.481405 seconds [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o built in 0.586364 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.280652 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o built in 1.043088 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sgexx.mod cmake/atm/CMakeFiles/atm.dir/sgexx.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/buffer.F90.o.provides.build [ 42%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 0.738531 seconds [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.263561 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o built in 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.250018 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.236073 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.256563 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o built in 0.296212 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.324953 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initSubgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o built in 0.373031 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o built in 0.351579 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/accumulmod.mod cmake/lnd/CMakeFiles/lnd.dir/accumulmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationpropertiestype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationpropertiestype.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridAveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edparamsmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o built in 0.401298 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessynchronizedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessynchronizedparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdutilsmod.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.257450 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpforctype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpforctype.mod.stamp GNU Target 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridavemod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridavemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynfilemod.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDPftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessizeagetypeindicesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessizeagetypeindicesmod.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.219080 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o built in 0.346233 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o built in 0.995075 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_pflotranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o built in 0.246621 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 1.132510 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/diocplantsoilbgctype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o built in 0.414723 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopeplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopeplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/mockplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/computeseedmod.mod cmake/lnd/CMakeFiles/lnd.dir/computeseedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdmod.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.760158 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarMod.F90 -o CMakeFiles/lnd.dir/dynVarMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o built in 1.210086 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.435267 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.356114 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o built in 0.669581 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o built in 0.679731 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.986137 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/histfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/histfilemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 8.308866 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_paraminterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o built in 0.659176 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_mod.mod cmake/atm/CMakeFiles/atm.dir/time_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvarmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvarmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tracname.mod cmake/atm/CMakeFiles/atm.dir/mo_tracname.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90:53:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o built in 0.354535 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_setrxt.mod.stamp GNU [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o built in 0.244814 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o built in 0.631658 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplanthydraulicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplanthydraulicsmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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[ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o built in 0.311234 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.601611 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o built in 0.676287 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessoilbgcfluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessoilbgcfluxmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o built in 0.441297 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfmainmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o built in 0.432905 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_setcoef.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/EnergyFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o built in 0.457050 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprmc.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o built in 0.278387 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o built in 0.932972 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprop.mod.stamp GNU [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o built in 1.354182 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_taumol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/array_index.mod cmake/atm/CMakeFiles/atm.dir/array_index.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constants_clubb.mod cmake/atm/CMakeFiles/atm.dir/constants_clubb.mod.stamp GNU [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o built in 0.252215 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o built in 0.672166 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.285002 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SolarAbsorbedType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o built in 1.101084 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o built in 0.374540 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.618552 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.312566 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o built in 0.707398 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o built in 0.441427 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 1.143641 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o built in 0.587631 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_roots.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.362572 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o built in 0.337441 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o built in 0.439869 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.629347 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o built in 1.842207 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.321920 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o built in 0.347378 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_tsdadg_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.509399 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o built in 0.413812 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o built in 0.304185 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sigma_sqd_w_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o built in 0.683897 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calendar.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.357880 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.302747 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o built in 0.688668 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o built in 0.333462 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.420024 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.354974 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o built in 0.401224 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Nc_Ncn_eqns.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o built in 0.532785 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_diffusion.mod cmake/atm/CMakeFiles/atm.dir/gw_diffusion.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o built in 0.671776 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_utils.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/diocbgcreactionstype.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o built in 0.356522 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopebgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopebgcreactionstype.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/transform_to_pdf_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.356320 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/mockbgcreactionstype.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scream_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o built in 0.397576 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o built in 0.331733 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrn.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o built in 0.494783 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glcDiagnosticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o built in 0.334580 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o built in 0.403003 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o built in 0.983256 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_utils.mod cmake/atm/CMakeFiles/atm.dir/spmd_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sim_dat.mod cmake/atm/CMakeFiles/atm.dir/mo_sim_dat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_lw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_lw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_setcoef.mod 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.376535 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 2.656807 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/interpolation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o built in 0.342776 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 0.323267 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.328282 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o built in 0.941795 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.287108 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type.mod cmake/atm/CMakeFiles/atm.dir/stats_type.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.285779 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/t_in_k_module.mod cmake/atm/CMakeFiles/atm.dir/t_in_k_module.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.299182 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_tsdadg_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_tsdadg_pdf.mod.stamp GNU /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_operations.mod cmake/atm/CMakeFiles/atm.dir/matrix_operations.mod.stamp GNU /usr/bin/cmake -E touch 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object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o.provides.build [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.471329 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o.provides.build [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/CNStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o built in 0.940659 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o.provides.build 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvrt.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvrt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o.provides.build [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/physconst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o built in 0.304233 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_control_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o built in 0.230926 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.554281 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 2.173854 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o built in 2.148991 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o built in 0.343766 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o.provides.build [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o built in 18.060802 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod cmake/atm/CMakeFiles/atm.dir/file_functions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clmfatesparaminterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/clmfatesparaminterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolation.mod cmake/atm/CMakeFiles/atm.dir/interpolation.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o built in 0.289610 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/saturation.mod cmake/atm/CMakeFiles/atm.dir/saturation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusfluxtype.mod.stamp GNU [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.960672 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.343683 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o built in 0.328654 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o built in 0.318787 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o built in 0.674512 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o built in 0.713749 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_pdf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edloggingmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/edloggingmortalitymod.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_reader.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_common.mod cmake/atm/CMakeFiles/atm.dir/gw_common.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/energyfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/energyfluxtype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o built in 2.810937 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/est_kessler_microphys_module.mod cmake/atm/CMakeFiles/atm.dir/est_kessler_microphys_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryinterfacemod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_importance_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o built in 0.463553 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitytype.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitytype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesistype.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesistype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/soilstatetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/solarabsorbedtype.mod cmake/lnd/CMakeFiles/lnd.dir/solarabsorbedtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/waterfluxtype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 3.403107 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_manager.mod cmake/atm/CMakeFiles/atm.dir/time_manager.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/betrbgcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iofilemod.mod cmake/atm/CMakeFiles/atm.dir/iofilemod.mod.stamp GNU [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o built in 0.278523 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/time_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.467204 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/filenames.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o built in 0.283384 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glcdiagnosticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/glcdiagnosticsmod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.763385 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/landunitdatatype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o built in 0.285046 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/sedfluxtype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.330669 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o built in 0.306943 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o.provides.build [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o built in 0.305326 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.370194 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeinterpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rad.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o built in 1.255245 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.280010 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.275871 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_exchange.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_filter_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_filter_exchange.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_landunit_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_exchange.mod.stamp GNU [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.348256 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o built in 1.075246 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbetrmod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/grid_class.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o built in 0.986861 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbasetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_type_utilities.mod.stamp GNU [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopystatetype.mod cmake/lnd/CMakeFiles/lnd.dir/canopystatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenfluxtype.mod.stamp GNU [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o built in 0.460887 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o built in 0.943915 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndtype.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndtype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.241675 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeuninterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeuninterpmod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.282468 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 3.056500 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o built in 1.349095 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o built in 0.360940 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o built in 0.332938 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edbtranmod.mod cmake/lnd/CMakeFiles/lnd.dir/edbtranmod.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.327516 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o built in 0.314060 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcohortdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edcohortdynamicsmod.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o built in 0.289600 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_reader.mod cmake/atm/CMakeFiles/atm.dir/input_reader.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o built in 0.424146 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 1.397512 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitymod.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitymod.mod.stamp GNU [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.809135 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o built in 1.777574 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.587505 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reactionsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/reactionsfactory.mod.stamp GNU [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VerticalProfileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_oro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.410108 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glc2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o built in 0.346641 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/output_2D_samples_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o built in 0.642124 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_importance_sample_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_importance_sample_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynlandunitareamod.mod cmake/lnd/CMakeFiles/lnd.dir/dynlandunitareamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reweightmod.mod cmake/lnd/CMakeFiles/lnd.dir/reweightmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o.provides.build [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o built in 0.447092 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o.provides.build [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o built in 0.428298 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o.provides.build [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o built in 0.332292 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tsinti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o built in 0.323249 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_exchangemod.mod.stamp GNU [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o built in 0.333228 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o built in 0.474401 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_constants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.296276 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_params.mod cmake/atm/CMakeFiles/atm.dir/mo_params.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/orbit.mod cmake/atm/CMakeFiles/atm.dir/orbit.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o.provides.build [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o built in 0.646968 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_2d_samples_module.mod cmake/atm/CMakeFiles/atm.dir/output_2d_samples_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnptype.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/lh_microphys_var_covar_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.962287 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/verticalprofilemod.mod cmake/lnd/CMakeFiles/lnd.dir/verticalprofilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o built in 0.368818 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o built in 0.448571 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelstubmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelstubmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_constants.mod cmake/atm/CMakeFiles/atm.dir/mo_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o.provides.build [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_control.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/quadrature_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o built in 0.324562 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gas_wetdep_opts.mod cmake/atm/CMakeFiles/atm.dir/gas_wetdep_opts.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.465173 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edphysiologymod.mod cmake/lnd/CMakeFiles/lnd.dir/edphysiologymod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o built in 0.466594 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o.provides.build [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.263912 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.292465 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.252712 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.308579 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o built in 1.150451 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.291628 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.258777 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.237421 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o built in 0.304741 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.263016 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.290511 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpatchdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edpatchdynamicsmod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.375235 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_exchangemod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 2.335796 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.241639 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.701341 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.329129 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.477953 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInventoryInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.432744 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.902181 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o built in 0.606562 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.436942 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionscentecacnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionscentecacnptype.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/numerical_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o built in 0.402204 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o built in 0.324539 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/skx_module.mod cmake/atm/CMakeFiles/atm.dir/skx_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcanopystructuremod.mod cmake/lnd/CMakeFiles/lnd.dir/edcanopystructuremod.mod.stamp GNU /usr/bin/cmake 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.845989 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o built in 0.359717 seconds [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o built in 0.405548 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 1.047302 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dimensions_mod.mod cmake/atm/CMakeFiles/atm.dir/dimensions_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.973311 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_control.mod cmake/atm/CMakeFiles/atm.dir/phys_control.mod.stamp GNU [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose 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Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chem_utls.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o built in 0.325193 seconds [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o built in 0.316647 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airmas.mod cmake/atm/CMakeFiles/atm.dir/mo_airmas.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveall.mod cmake/atm/CMakeFiles/atm.dir/mo_waveall.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveo3.mod cmake/atm/CMakeFiles/atm.dir/mo_waveo3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ps2str.mod cmake/atm/CMakeFiles/atm.dir/mo_ps2str.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setair.mod cmake/atm/CMakeFiles/atm.dir/mo_setair.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setcld.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.325936 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lymana.mod cmake/atm/CMakeFiles/atm.dir/mo_lymana.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelen.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelen.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o built in 1.001554 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmainmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.661696 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edsurfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/edsurfaceradiationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplantrespphotosynthmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplantrespphotosynthmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/applicationsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/applicationsfactory.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/edinitmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o built in 0.294347 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physics_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o built in 0.336575 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cldoptics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o built in 0.437179 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_helper_module.mod cmake/atm/CMakeFiles/atm.dir/advance_helper_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion.mod cmake/atm/CMakeFiles/atm.dir/diffusion.mod.stamp GNU [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o built in 0.397995 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mean_adv.mod cmake/atm/CMakeFiles/atm.dir/mean_adv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sponge_layer_damping.mod cmake/atm/CMakeFiles/atm.dir/sponge_layer_damping.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/fill_holes.mod cmake/atm/CMakeFiles/atm.dir/fill_holes.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mono_flux_limiter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o built in 17.302227 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pos_definite_module.mod cmake/atm/CMakeFiles/atm.dir/pos_definite_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columndatatype.mod cmake/lnd/CMakeFiles/lnd.dir/columndatatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o built in 0.828542 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/turbulent_adv_pdf.mod cmake/atm/CMakeFiles/atm.dir/turbulent_adv_pdf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp3_module.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calc_pressure.mod cmake/atm/CMakeFiles/atm.dir/calc_pressure.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/numerical_check.mod cmake/atm/CMakeFiles/atm.dir/numerical_check.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/adg1_adg2_3d_luhar_pdf.mod cmake/atm/CMakeFiles/atm.dir/adg1_adg2_3d_luhar_pdf.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.391934 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o built in 2.288704 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o built in 0.358855 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 2.475163 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.322011 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o built in 0.435561 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.280084 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 0.902013 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.503784 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 3.246753 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtype.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.398460 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.720144 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.351658 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.707982 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o built in 0.265031 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o built in 0.346560 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o built in 0.505348 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o built in 1.621365 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropharvestpoolsmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropharvestpoolsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceresistancemod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceresistancemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittverttranspmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittverttranspmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosolmod.mod cmake/lnd/CMakeFiles/lnd.dir/aerosolmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/drydepvelocity.mod cmake/lnd/CMakeFiles/lnd.dir/drydepvelocity.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dustmod.mod cmake/lnd/CMakeFiles/lnd.dir/dustmod.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o built in 0.370947 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 6.115263 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/cldaero_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_common.mod cmake/atm/CMakeFiles/atm.dir/dust_common.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o built in 1.302563 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_state.mod cmake/atm/CMakeFiles/atm.dir/element_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/erosionmod.mod cmake/lnd/CMakeFiles/lnd.dir/erosionmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chem_utls.mod cmake/atm/CMakeFiles/atm.dir/mo_chem_utls.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o built in 0.371244 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.348121 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_exchangemod.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.358800 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterbudgetmod.mod cmake/lnd/CMakeFiles/lnd.dir/waterbudgetmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanalbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanalbedomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.487764 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_explicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mono_flux_limiter.mod cmake/atm/CMakeFiles/atm.dir/mono_flux_limiter.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mixing_length.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o built in 0.291517 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_closure_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o built in 0.465766 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sfc_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/sfc_varnce_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_clubb_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_clubb_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_0.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_driver_module.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_driver_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parallel_mod.mod cmake/atm/CMakeFiles/atm.dir/parallel_mod.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/charge_neutrality.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o built in 0.873641 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mass_xforms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o built in 0.343018 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mean_mass.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o built in 0.334663 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_xsections.mod cmake/atm/CMakeFiles/atm.dir/mo_xsections.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rtlink.mod cmake/atm/CMakeFiles/atm.dir/mo_rtlink.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/set_cp.mod cmake/atm/CMakeFiles/atm.dir/set_cp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_explicit.mod cmake/atm/CMakeFiles/atm.dir/clip_explicit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mixing_length.mod cmake/atm/CMakeFiles/atm.dir/mixing_length.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/setup_clubb_pdf_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o built in 0.365284 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 3.013727 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.521699 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.476154 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o built in 3.173351 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.367654 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o built in 0.419972 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod cmake/atm/CMakeFiles/atm.dir/charge_neutrality.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mass_xforms.mod cmake/atm/CMakeFiles/atm.dir/mo_mass_xforms.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.356842 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mean_mass.mod cmake/atm/CMakeFiles/atm.dir/mo_mean_mass.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.365713 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_wp2_wp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o built in 1.271489 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xm_wpxp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 15.025584 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.501190 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 0.853047 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.301255 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.339530 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o built in 3.868369 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 0.788303 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.605058 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.475499 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.600173 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.359222 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.309458 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o built in 0.309149 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GrowthRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 6.163444 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.324265 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_closure_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_closure_module.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o built in 0.379316 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/setup_clubb_pdf_params.mod cmake/atm/CMakeFiles/atm.dir/setup_clubb_pdf_params.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.726500 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_api_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_api_module.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.534580 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 0.777259 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o built in 5.224791 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 0.552174 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 1.092512 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 14.131944 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg2_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o built in 0.812829 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/temperaturetype.mod cmake/lnd/CMakeFiles/lnd.dir/temperaturetype.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/reduction_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o built in 0.555052 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.353925 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynharvestmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynharvestmod.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o built in 0.496047 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/annualupdatemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/c14decaymod.mod cmake/lnd/CMakeFiles/lnd.dir/c14decaymod.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.462943 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.363258 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonisofluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonisofluxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod cmake/atm/CMakeFiles/atm.dir/gridgraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cngapmortalitybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cngapmortalitybetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybvcoord_mod.mod cmake/atm/CMakeFiles/atm.dir/hybvcoord_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate1betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate1betrmod.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 1.663896 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.535667 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate2betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate2betrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate3betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate3betrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.781042 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o built in 0.805105 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 0.985642 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o built in 0.557994 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.346243 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o built in 1.858279 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o built in 3.725064 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.388097 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2glcMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.388812 seconds [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VOCEmissionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o built in 0.539845 seconds [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o built in 0.682275 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 1.134116 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o built in 2.641250 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystembalancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystembalancecheckmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gapmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/gapmortalitymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate1mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 0.881995 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o.provides.build [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.499109 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridadjustmentsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridadjustmentsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o built in 0.337192 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TotalWaterAndHeatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.382417 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.472750 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 0.587793 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedtype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 7.417648 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.493987 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o built in 0.300028 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o built in 0.406981 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod_base.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eos.mod cmake/atm/CMakeFiles/atm.dir/eos.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rgrid.mod cmake/atm/CMakeFiles/atm.dir/rgrid.mod.stamp GNU [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.605121 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.471645 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_clubb_core_module.mod cmake/atm/CMakeFiles/atm.dir/advance_clubb_core_module.mod.stamp GNU [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 1.150059 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 1.268154 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o built in 0.523742 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedtype_mod.mod cmake/atm/CMakeFiles/atm.dir/schedtype_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cube_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o built in 0.668834 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.372374 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/element_ops.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o built in 0.854010 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedule_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o built in 0.639406 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.630081 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o built in 1.640428 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_interfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o built in 1.552799 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4mod.mod cmake/lnd/CMakeFiles/lnd.dir/ch4mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilmoiststressmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilmoiststressmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyhydrologymod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o built in 0.898740 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edge_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 0.584830 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrifDenitrifMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 0.559789 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cube_mod.mod cmake/atm/CMakeFiles/atm.dir/cube_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowsnicarmod.mod cmake/lnd/CMakeFiles/lnd.dir/snowsnicarmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/maintenancerespmod.mod cmake/lnd/CMakeFiles/lnd.dir/maintenancerespmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_ops.mod cmake/atm/CMakeFiles/atm.dir/element_ops.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulation.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulation.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.305496 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o built in 1.740582 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 0.639463 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.332195 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/imex_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o built in 3.319867 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedule_mod.mod cmake/atm/CMakeFiles/atm.dir/schedule_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/activelayermod.mod cmake/lnd/CMakeFiles/lnd.dir/activelayermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o built in 3.372668 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/totalwaterandheatmod.mod cmake/lnd/CMakeFiles/lnd.dir/totalwaterandheatmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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cmake/lnd/CMakeFiles/lnd.dir/dyninitcolumnsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o built in 0.882473 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zoltan_mod.mod cmake/atm/CMakeFiles/atm.dir/zoltan_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o built in 1.586490 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o built in 0.392068 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o built in 0.295832 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scalable_grid_init_mod.mod cmake/atm/CMakeFiles/atm.dir/scalable_grid_init_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geometry_mod.mod cmake/atm/CMakeFiles/atm.dir/geometry_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/imex_mod.mod cmake/atm/CMakeFiles/atm.dir/imex_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o built in 1.348898 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 0.872924 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/snowhydrologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/lakefluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o built in 0.393404 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.673948 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o built in 0.462610 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_pio_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/edge_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.322342 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 0.845158 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/horizontal_interpolate.mod cmake/atm/CMakeFiles/atm.dir/horizontal_interpolate.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/readinitial.mod cmake/atm/CMakeFiles/atm.dir/readinitial.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o built in 0.302174 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mesh_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/se_single_column_mod.mod cmake/atm/CMakeFiles/atm.dir/se_single_column_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o built in 0.944120 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/croptype.mod cmake/lnd/CMakeFiles/lnd.dir/croptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_pio_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_pio_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod.mod cmake/atm/CMakeFiles/atm.dir/edge_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elmfatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/elmfatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o built in 0.804303 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.333778 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.307629 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.266741 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o built in 0.730419 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o built in 2.303605 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/bndry_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.703089 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/mesh_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 1.134928 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_solar_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 1.483857 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/solar_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o built in 1.492238 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o built in 0.411035 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o built in 0.538306 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/input_data_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o built in 0.759095 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_prop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 0.530290 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceradiationmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.302086 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.421897 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 0.976994 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 2.704867 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.428206 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.445396 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_initfiles.mod cmake/atm/CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 2.535134 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_esmf.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.480551 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_grid_support.mod cmake/atm/CMakeFiles/atm.dir/cam_grid_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod_base.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod_base.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/interpolate_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o built in 0.544592 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solar_parms.mod cmake/atm/CMakeFiles/atm.dir/mo_solar_parms.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dyncropFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o built in 0.951081 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solar_data.mod cmake/atm/CMakeFiles/atm.dir/solar_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_data_utils.mod cmake/atm/CMakeFiles/atm.dir/input_data_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/baregroundfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/baregroundfluxesmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ncdio_atm.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o built in 0.552941 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_prop.mod cmake/atm/CMakeFiles/atm.dir/phys_prop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mag_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o built in 0.433321 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakehydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/lakehydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/laketemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/laketemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o built in 0.858330 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate1mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AllocationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/euvac.mod cmake/atm/CMakeFiles/atm.dir/euvac.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o built in 0.324983 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadebgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadebgcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadecnmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadecnmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologyfluxlimitmod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologyfluxlimitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o built in 0.737682 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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cmake_copy_f90_mod cmake/lnd/dyncropfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncropfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o built in 0.346617 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.310314 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mag_parms.mod cmake/atm/CMakeFiles/atm.dir/mag_parms.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jshort.mod cmake/atm/CMakeFiles/atm.dir/mo_jshort.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 0.922288 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jlong.mod cmake/atm/CMakeFiles/atm.dir/mo_jlong.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.407302 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.635078 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_support.mod cmake/atm/CMakeFiles/atm.dir/cam_history_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 2.011539 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 3.152078 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_theta.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.481379 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dof_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o built in 0.356391 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/global_norms_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o built in 0.490310 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o built in 0.454667 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hycoef.mod cmake/atm/CMakeFiles/atm.dir/hycoef.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/pdelb0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.358185 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o built in 0.637553 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dof_mod.mod cmake/atm/CMakeFiles/atm.dir/dof_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_base.mod cmake/atm/CMakeFiles/atm.dir/viscosity_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o built in 0.850792 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/global_norms_mod.mod cmake/atm/CMakeFiles/atm.dir/global_norms_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cg_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o built in 5.530104 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/allocationmod.mod cmake/lnd/CMakeFiles/lnd.dir/allocationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o built in 0.309566 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o built in 0.307189 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.484202 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o built in 0.471177 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cg_mod.mod cmake/atm/CMakeFiles/atm.dir/cg_mod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.297962 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_si_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_si_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/solver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.560817 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o built in 2.189078 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnallocationbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnallocationbetrmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 2.195802 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 1.105643 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittdecompmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittdecompmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 1.045191 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 3.194360 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 1.228472 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o built in 0.608150 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_state_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_state_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 0.685650 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sl_advection.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o built in 1.777611 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyfluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/readparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/readparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advance_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o built in 0.754070 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopytemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/canopytemperaturemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sl_advection.mod cmake/atm/CMakeFiles/atm.dir/sl_advection.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advection_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o built in 0.243158 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/controlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 0.766881 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o built in 1.582699 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o built in 3.822334 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.534399 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_driver_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.478869 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_implicit_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.338426 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 4.501785 seconds [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o built in 0.899889 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o built in 1.482618 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_funcsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_funcsmod.mod.stamp GNU [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/prim_driver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.548745 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_util_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.323151 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_import_export.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o built in 0.876819 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_grid.mod cmake/atm/CMakeFiles/atm.dir/dyn_grid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.573476 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_instmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_instmod.mod.stamp GNU [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 1.434249 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o built in 1.699850 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpftfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpftfilemod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o built in 0.972095 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.407903 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ref_pres.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/namelist_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o built in 0.342730 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pdepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/pdepstreammod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/restfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_import_export.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_import_export.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_data_flux.mod cmake/atm/CMakeFiles/atm.dir/co2_data_flux.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ref_pres.mod cmake/atm/CMakeFiles/atm.dir/ref_pres.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.181229 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.754024 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_mod.mod cmake/atm/CMakeFiles/atm.dir/namelist_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o built in 1.241529 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers_suite.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o built in 0.347776 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.433618 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/satellitephenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/satellitephenologymod.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radae.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o built in 2.384942 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o built in 0.696847 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod cmake/atm/CMakeFiles/atm.dir/phys_grid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelvsfmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelvsfmmod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 1.056948 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.389297 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.254473 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/debug_info.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.267437 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusdynamicsmod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.566131 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers_suite.mod cmake/atm/CMakeFiles/atm.dir/tracers_suite.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 2.106718 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.545830 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.282309 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.259082 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.256367 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.247116 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 1.607107 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.414254 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 4.457705 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o built in 0.809704 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/soil_erod_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 1.110708 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/polar_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o built in 0.317145 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_synoz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o built in 0.401255 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sethet.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o built in 0.378738 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 3.866699 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_msis_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o built in 2.340307 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemDynMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o built in 0.317894 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o built in 0.492543 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soiltemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/soiltemperaturemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_comp.mod cmake/atm/CMakeFiles/atm.dir/dyn_comp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug_util.mod cmake/atm/CMakeFiles/atm.dir/phys_debug_util.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o built in 1.203783 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hk_conv.mod cmake/atm/CMakeFiles/atm.dir/hk_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/debug_info.mod cmake/atm/CMakeFiles/atm.dir/debug_info.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat.mod cmake/atm/CMakeFiles/atm.dir/cldwat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radae.mod cmake/atm/CMakeFiles/atm.dir/radae.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/gravity_waves_sources.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.583159 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/module_perturb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o built in 2.093956 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/dust_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.256301 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/boundarydata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.963501 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sethet.mod cmake/atm/CMakeFiles/atm.dir/mo_sethet.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologymod.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o built in 2.800133 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_snoe.mod cmake/atm/CMakeFiles/atm.dir/mo_snoe.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyNoDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o built in 0.745088 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystemdynmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystemdynmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.134340 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologynodrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologynodrainagemod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 1.273530 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 2.403993 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.342441 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o built in 0.347380 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cld_sediment.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gravity_waves_sources.mod cmake/atm/CMakeFiles/atm.dir/gravity_waves_sources.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/module_perturb.mod cmake/atm/CMakeFiles/atm.dir/module_perturb.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o built in 0.358116 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_model.mod cmake/atm/CMakeFiles/atm.dir/dust_model.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o built in 0.552883 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/boundarydata.mod cmake/atm/CMakeFiles/atm.dir/boundarydata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/majorsp_diffusion.mod cmake/atm/CMakeFiles/atm.dir/majorsp_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_scream.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_scream.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rayleigh_friction.mod cmake/atm/CMakeFiles/atm.dir/rayleigh_friction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cld_sediment.mod cmake/atm/CMakeFiles/atm.dir/pkg_cld_sediment.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o built in 0.545355 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_gmean.mod cmake/atm/CMakeFiles/atm.dir/phys_gmean.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/physics_buffer.F90 -o CMakeFiles/atm.dir/physics_buffer.F90.o [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 2.104358 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.748158 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o built in 0.499135 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o built in 0.335323 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_surfvals.mod cmake/atm/CMakeFiles/atm.dir/chem_surfvals.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 2.336101 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 3.197211 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 4.396025 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.386819 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 3.482504 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.751396 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.466821 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.669947 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.416682 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 3.004041 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU [ 83%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.258099 seconds [ 83%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.349056 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o built in 0.435552 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_esmf.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_esmf.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 0.934153 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.336122 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.313962 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.564040 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.497614 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/output_aerocom_aie.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.401483 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/cfc11star.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o built in 0.505104 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airplane.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o Target liblnd.a built in 0.206297 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib liblnd.a Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o built in 0.337507 seconds Target 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-DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o Target liblnd.a built in 0.162990 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 85%] Built target lnd [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.521712 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.346706 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.365086 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.503718 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o built in 0.738624 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_neu_wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o built in 0.559129 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/rate_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 1.231903 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tropopause.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o built in 0.372344 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/read_volc_radiation_data.mod cmake/atm/CMakeFiles/atm.dir/read_volc_radiation_data.mod.stamp GNU [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.383549 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/slingo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o built in 0.819469 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radheat.mod cmake/atm/CMakeFiles/atm.dir/radheat.mod.stamp GNU [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o built in 1.330136 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.422907 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituent_burden.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o built in 1.581981 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o built in 0.469213 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.468125 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o built in 0.357957 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/conv_water.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o built in 0.478354 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o built in 0.364537 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o built in 0.469060 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.712386 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/qbo.mod cmake/atm/CMakeFiles/atm.dir/qbo.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/sslt_rebin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.376775 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o built in 0.389037 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o built in 0.465986 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.349440 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o built in 0.448995 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/forecast.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 1.756538 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/clybry_fam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.360945 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airglow.mod cmake/atm/CMakeFiles/atm.dir/mo_airglow.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_solarproton.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o built in 1.602254 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.307793 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rate_diags.mod cmake/atm/CMakeFiles/atm.dir/rate_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tropopause.mod cmake/atm/CMakeFiles/atm.dir/tropopause.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o built in 3.788750 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ebert_curry.mod cmake/atm/CMakeFiles/atm.dir/ebert_curry.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/slingo.mod cmake/atm/CMakeFiles/atm.dir/slingo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aoa_tracers.mod cmake/atm/CMakeFiles/atm.dir/aoa_tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_ozone_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_ozone_data.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.572642 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituent_burden.mod cmake/atm/CMakeFiles/atm.dir/constituent_burden.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tidal_diag.mod cmake/atm/CMakeFiles/atm.dir/tidal_diag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_fraction.mod cmake/atm/CMakeFiles/atm.dir/cloud_fraction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_cover_diags.mod cmake/atm/CMakeFiles/atm.dir/cloud_cover_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/conv_water.mod cmake/atm/CMakeFiles/atm.dir/conv_water.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_update_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_update_mod.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.585307 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.622705 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 0.996371 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nudging.mod cmake/atm/CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_rebin.mod cmake/atm/CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers.mod cmake/atm/CMakeFiles/atm.dir/tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_defaults.mod cmake/atm/CMakeFiles/atm.dir/history_defaults.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_scam.mod cmake/atm/CMakeFiles/atm.dir/history_scam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sox_cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/sox_cldaero_mod.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.706819 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 1.945823 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 1.007965 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.849862 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o built in 0.455566 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_wateruptake.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_wateruptake.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o built in 1.203503 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clybry_fam.mod cmake/atm/CMakeFiles/atm.dir/clybry_fam.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built in 1.198941 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solarproton.mod cmake/atm/CMakeFiles/atm.dir/mo_solarproton.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_rates.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_rates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/exbdrift.mod cmake/atm/CMakeFiles/atm.dir/exbdrift.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 9.194694 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o built in 2.729024 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldfrc2m.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o built in 0.526188 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv.mod cmake/atm/CMakeFiles/atm.dir/zm_conv.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o built in 0.497451 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc_cam.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc_cam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop_bam.mod cmake/atm/CMakeFiles/atm.dir/ndrop_bam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice_cam.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/camsrfexch.mod cmake/atm/CMakeFiles/atm.dir/camsrfexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_data.mod cmake/atm/CMakeFiles/atm.dir/tracer_data.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_drydep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o built in 1.097525 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_gasaerexch.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_gasaerexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_newnuc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_newnuc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 1.377056 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.778831 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.576015 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.985122 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.593076 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.524390 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 1.996554 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.705364 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.616840 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.400437 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.583085 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.457097 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.526276 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.682023 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.672427 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.781301 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aer_opt.mod cmake/atm/CMakeFiles/atm.dir/modal_aer_opt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 0.965084 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.394934 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.525101 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o built in 0.469284 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.707470 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_shallow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.385713 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 1.258752 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 1.098698 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o built in 0.913853 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o built in 0.421341 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iop_surf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o built in 0.242651 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setsox.mod cmake/atm/CMakeFiles/atm.dir/mo_setsox.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_deposition.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o built in 0.997093 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_drydep.mod cmake/atm/CMakeFiles/atm.dir/mo_drydep.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_coag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o built in 0.388888 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_convproc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o built in 1.648626 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/seasalt_model.mod cmake/atm/CMakeFiles/atm.dir/seasalt_model.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/linoz_data.mod cmake/atm/CMakeFiles/atm.dir/linoz_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_cnst.mod cmake/atm/CMakeFiles/atm.dir/tracer_cnst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_extfrc.mod cmake/atm/CMakeFiles/atm.dir/mo_extfrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lightning.mod cmake/atm/CMakeFiles/atm.dir/mo_lightning.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.662745 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_srf_emissions.mod cmake/atm/CMakeFiles/atm.dir/mo_srf_emissions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tgcm_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_tgcm_ubc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aer_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 3.557498 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/cloud_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o built in 0.746943 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cospsimulator_intr.mod cmake/atm/CMakeFiles/atm.dir/cospsimulator_intr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation_data.mod cmake/atm/CMakeFiles/atm.dir/radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_state.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/check_energy.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/stratiform.F90 -o 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-DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o built in 1.068676 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_import_export.mod cmake/atm/CMakeFiles/atm.dir/atm_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o built in 1.906870 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.430578 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.360534 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.805730 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.383301 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o built in 0.457846 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_rad_props.mod cmake/atm/CMakeFiles/atm.dir/cloud_rad_props.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radlw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o built in 0.433145 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hb_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 1.385738 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/macrop_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.371830 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.712857 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aerodep_flx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o built in 0.523911 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 1.009385 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chlorine_loading_data.mod cmake/atm/CMakeFiles/atm.dir/chlorine_loading_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photoin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o built in 1.375798 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setext.mod cmake/atm/CMakeFiles/atm.dir/mo_setext.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/upper_bc.mod cmake/atm/CMakeFiles/atm.dir/upper_bc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o built in 0.566094 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radlw.mod cmake/atm/CMakeFiles/atm.dir/radlw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radsw.mod cmake/atm/CMakeFiles/atm.dir/radsw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hb_diff.mod cmake/atm/CMakeFiles/atm.dir/hb_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_deep.mod cmake/atm/CMakeFiles/atm.dir/convect_deep.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/stepon.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o built in 0.497298 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aerodep_flx.mod cmake/atm/CMakeFiles/atm.dir/aerodep_flx.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o built in 0.642620 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.683517 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.620483 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o built in 0.358425 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/molec_diff.mod cmake/atm/CMakeFiles/atm.dir/molec_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stepon.mod cmake/atm/CMakeFiles/atm.dir/stepon.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU 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-DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o built in 1.669662 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:87:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:88:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:49:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:48:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:50:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:47:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o built in 1.299242 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o built in 0.911969 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_amicphys.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_amicphys.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation.mod cmake/atm/CMakeFiles/atm.dir/radiation.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photo.mod cmake/atm/CMakeFiles/atm.dir/mo_photo.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 1.068843 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.511823 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.638554 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/aero_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 2.001765 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_usrrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o built in 1.091077 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o built in 1.015459 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_gas_phase_chemdr.mod cmake/atm/CMakeFiles/atm.dir/mo_gas_phase_chemdr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waccm_hrates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o built in 0.522429 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waccm_hrates.mod cmake/atm/CMakeFiles/atm.dir/mo_waccm_hrates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o built in 6.850281 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_intr.mod cmake/atm/CMakeFiles/atm.dir/clubb_intr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.353607 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 0.951565 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 1.860047 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.549908 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_interface.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o built in 1.449362 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cam_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o built in 0.925956 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_physics.mod cmake/atm/CMakeFiles/atm.dir/restart_physics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o built in 3.321195 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_interface.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_interface.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o built in 7.573449 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.361656 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inidat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o built in 0.587190 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inidat.mod cmake/atm/CMakeFiles/atm.dir/inidat.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/restart_dynamics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o built in 0.496266 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_restart.mod cmake/atm/CMakeFiles/atm.dir/cam_restart.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/runtime_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o built in 0.505574 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_comp.mod cmake/atm/CMakeFiles/atm.dir/cam_comp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o built in 0.630740 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/runtime_opts.mod cmake/atm/CMakeFiles/atm.dir/runtime_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl/CMakeFiles/e3sm.exe.dir/DependInfo.cmake --color= Scanning dependencies of target e3sm.exe make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o built in 0.155536 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/t_drv_timers_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/t_drv_timers_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o built in 0.191124 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.170082 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.501415 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.524689 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 0.801170 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.291384 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.334032 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.377004 seconds f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 1.422854 seconds [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.212297 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.700396 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o built in 0.298145 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. 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-fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof 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/usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. 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-fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.901809 seconds [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. 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CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o built in 0.564459 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_glc_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.560424 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 0.943010 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.212699 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.532392 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.537621 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o built in 0.474932 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_rest_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_rest_mod.mod.stamp GNU /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90:39:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o built in 0.386628 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o built in 1.047586 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_hist_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_hist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o built in 1.592046 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cime_comp_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cime_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o built in 0.187679 seconds [100%] Linking Fortran executable /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && /usr/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -Wl,-rpath,/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.8.0-gfortran/lib CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o -o /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe -L/usr/lib/gcc/x86_64-linux-gnu/10 ../atm/libatm.a ../lnd/liblnd.a ../ice/libice.a ../ocn/libocn.a ../rof/librof.a ../glc/libglc.a ../wav/libwav.a ../iac/libiac.a ../esp/libesp.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib/libcsm_share.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe built in 1.189039 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/CMakeFiles 0 real 254.29 user 739.18 sys 209.76 [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_RICO/run/atm.log.*.gz' gzip: projects/scratch/SCM_runs/test_RICO/run/atm.log.*.gz: No such file or directory [Pipeline] echo Not all logs were made for RICO. [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS